Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq25885 105 6e-18 seq33636 91.5 1e-13 seq4181 91.5 1e-13 seq26788 87.8 2e-12 seq30328 82.4 7e-11 >seq25885 Length=2931 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| |||| |||||||||||||| | || || || || Sbjct 995 CATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTC 936 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| ||| || | || || || || |||||||| ||||| ||||| || || Sbjct 935 GGACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCA 876 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || ||||| ||||||||| | || ||| || || ||| || || Sbjct 875 GCAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAA 816 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || |||| || | || ||||||| Sbjct 815 CATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGG 768 >seq33636 Length=8621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||| |||||| |||| || || || | Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || || ||||||||| ||| | ||||| |||||| Sbjct 4978 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5037 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || |||||||| Sbjct 5038 CAGCGCCTTATCTTCGCTGG 5057 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || ||||| || || || || |||||| | || || || || Sbjct 4631 CATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAG 4690 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || ||| || || ||||||||| ||| | ||||| ||||| Sbjct 4691 CGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 4750 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||||| || || |||||||| Sbjct 4751 GCAGCGCCTCATCTTCGCTGG 4771 >seq4181 Length=1006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||| |||||| |||| || || || | Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || || ||||||||| ||| | ||||| |||||| Sbjct 804 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 863 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || |||||||| Sbjct 864 CAGCGCCTTATCTTCGCTGG 883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || ||||| || || || || |||||| | || || || || Sbjct 457 CATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAG 516 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || ||| || || ||||||||| ||| | ||||| ||||| Sbjct 517 CGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 576 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||||| || || |||||||| Sbjct 577 GCAGCGCCTCATCTTCGCTGG 597 >seq26788 Length=2620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || ||||| || || || || |||||| | || || || || Sbjct 1824 CATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAG 1883 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || ||| || || ||||||||| ||| | ||||| ||||| Sbjct 1884 CGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1943 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||||| || || |||||||| Sbjct 1944 GCAGCGCCTTATCTTCGCTGG 1964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | || || || || | Sbjct 2109 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 2168 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || || ||||||||| ||| | ||||| |||||| Sbjct 2169 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 2228 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || |||||||| Sbjct 2229 CAGCGCCTTATCTTCGCTGG 2248 >seq30328 Length=6095 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||| | |||||||| ||||| | ||||| | || ||||| || || ||| | |||||| Sbjct 2496 TTTGCTCAAGAAGTTCAAGTTCCAGAGGCTCGCTGTTTTTATGGTTTCCAAATAGCCATT 2437 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 |||||| | ||||| |||||||||||||| | || | | ||||| ||||| Sbjct 2436 GAAAACATTCATTCTGAAATGTATTCGCTGTTGATTAACTCTTACGTTAAGGA 2384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445573004247360