Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 105 6e-18
seq33636 91.5 1e-13
seq4181 91.5 1e-13
seq26788 87.8 2e-12
seq30328 82.4 7e-11
>seq25885
Length=2931
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||||||||| ||||| |||| |||||||||||||| | || || || ||
Sbjct 995 CATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTC 936
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| ||| || | || || || || |||||||| ||||| ||||| || ||
Sbjct 935 GGACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCA 876
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || || || ||||| ||||||||| | || ||| || || ||| || ||
Sbjct 875 GCAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAA 816
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || || |||| || | || |||||||
Sbjct 815 CATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGG 768
>seq33636
Length=8621
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || ||||| |||||| |||| || || || |
Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || ||| || || ||||||||| ||| | ||||| ||||||
Sbjct 4978 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5037
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| || || ||||||||
Sbjct 5038 CAGCGCCTTATCTTCGCTGG 5057
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| || ||||| || || || || |||||| | || || || ||
Sbjct 4631 CATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAG 4690
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | || ||| || || ||||||||| ||| | ||||| |||||
Sbjct 4691 CGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 4750
Query 31312 GCAGCGTCTAATATTCGCTGG 31332
|||||| || || ||||||||
Sbjct 4751 GCAGCGCCTCATCTTCGCTGG 4771
>seq4181
Length=1006
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || ||||| |||||| |||| || || || |
Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || ||| || || ||||||||| ||| | ||||| ||||||
Sbjct 804 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 863
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| || || ||||||||
Sbjct 864 CAGCGCCTTATCTTCGCTGG 883
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| || ||||| || || || || |||||| | || || || ||
Sbjct 457 CATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAG 516
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | || ||| || || ||||||||| ||| | ||||| |||||
Sbjct 517 CGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 576
Query 31312 GCAGCGTCTAATATTCGCTGG 31332
|||||| || || ||||||||
Sbjct 577 GCAGCGCCTCATCTTCGCTGG 597
>seq26788
Length=2620
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| || ||||| || || || || |||||| | || || || ||
Sbjct 1824 CATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAG 1883
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | || ||| || || ||||||||| ||| | ||||| |||||
Sbjct 1884 CGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1943
Query 31312 GCAGCGTCTAATATTCGCTGG 31332
|||||| || || ||||||||
Sbjct 1944 GCAGCGCCTTATCTTCGCTGG 1964
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || || || |||||| | || || || || |
Sbjct 2109 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 2168
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || ||| || || ||||||||| ||| | ||||| ||||||
Sbjct 2169 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 2228
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| || || ||||||||
Sbjct 2229 CAGCGCCTTATCTTCGCTGG 2248
>seq30328
Length=6095
Score = 82.4 bits (90), Expect = 7e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
||| | |||||||| ||||| | ||||| | || ||||| || || ||| | ||||||
Sbjct 2496 TTTGCTCAAGAAGTTCAAGTTCCAGAGGCTCGCTGTTTTTATGGTTTCCAAATAGCCATT 2437
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|||||| | ||||| |||||||||||||| | || | | ||||| |||||
Sbjct 2436 GAAAACATTCATTCTGAAATGTATTCGCTGTTGATTAACTCTTACGTTAAGGA 2384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445573004247360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |