Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq21189 89.7 6e-13
seq30328 84.2 3e-11
>seq21189
Length=1027
Score = 89.7 bits (98), Expect = 6e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814
||||||||| | || || ||||||| |||||| || || | ||||||| ||| ||
Sbjct 421 ATGAATTCCAATGGCAACTCGCATTAGCATGTGTTGGGGACGCTCAACAACTTTCCCGTC 362
Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874
||||||||||| || || ||| | || ||||| |||||||| |||| |||||
Sbjct 361 AATTTTCAACAAATAAGAACGTTCAAGTGTCTTAAACCCAAAATATGTGTAGCTGAAGTC 302
Query 63875 TCGTTCGTAAATAATAACCGAATTGAG 63901
|| ||||||||||| | ||||| ||
Sbjct 301 CCGGTCGTAAATAATTGCTGAATTAAG 275
>seq30328
Length=6095
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/177 (71%), Gaps = 3/177 (2%)
Strand=Plus/Plus
Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676
|||||||||||| ||| || ||||||| ||||| || |||||||||||||| ||
Sbjct 2113 AATTAATTCGTTGCTGTGCGTCAGACCGGGCAAAAGGCCTCGTTTTTTAAGCCAAAAAAT 2172
Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736
| ||| || || || ||||| || || || || |||||||| |||| ||||||||
Sbjct 2173 TGCAGCAAAACTCCCCGAGAAGAAAATCCCCTCAACCGCAGCAAATGCAACGAGTCTCTC 2232
Query 33737 TCCATAACCGGCGCTG--TCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33790
|| || ||| | | || ||||| | ||||| ||||||||||||||
Sbjct 2233 CGCAAAAGAAGCGTCGGAACTTGCGATCCAACGAAGGGCCCAGTCGGCCTTCTTTTT 2289
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
||| ||||| |||| | ||||| || ||||||||| ||||||||||||||||||||
Sbjct 2383 ATCCTTAACGTAAGAGTTAATCAACAGCGAATACATTTCAGAATGAATGTTTTCAATGGC 2442
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| || || || || ||||| | |||||| | || || ||||||
Sbjct 2443 TATTTGGAAACCATAAAAACAGCGAGCCTCTGGAACTTGAACTTCT 2488
Score = 84.2 bits (92), Expect = 3e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| || || |||||||||||||| || ||||||| || || | | ||| ||||||||
Sbjct 2715 ACCTCCTCAACTGTCCAAAATGAAGCAACTGCCTTCTTGTAAAATTGCCATATGTCATGG 2774
Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175
|||| ||| |||||||| ||||| | |||||| |||
Sbjct 2775 TATTTGATGGGGAAAATGACAAAACGATTTGGGTTT 2810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629544353634240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |