Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq21189 89.7 6e-13 seq30328 84.2 3e-11 >seq21189 Length=1027 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 ||||||||| | || || ||||||| |||||| || || | ||||||| ||| || Sbjct 421 ATGAATTCCAATGGCAACTCGCATTAGCATGTGTTGGGGACGCTCAACAACTTTCCCGTC 362 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 ||||||||||| || || ||| | || ||||| |||||||| |||| ||||| Sbjct 361 AATTTTCAACAAATAAGAACGTTCAAGTGTCTTAAACCCAAAATATGTGTAGCTGAAGTC 302 Query 63875 TCGTTCGTAAATAATAACCGAATTGAG 63901 || ||||||||||| | ||||| || Sbjct 301 CCGGTCGTAAATAATTGCTGAATTAAG 275 >seq30328 Length=6095 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676 |||||||||||| ||| || ||||||| ||||| || |||||||||||||| || Sbjct 2113 AATTAATTCGTTGCTGTGCGTCAGACCGGGCAAAAGGCCTCGTTTTTTAAGCCAAAAAAT 2172 Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 | ||| || || || ||||| || || || || |||||||| |||| |||||||| Sbjct 2173 TGCAGCAAAACTCCCCGAGAAGAAAATCCCCTCAACCGCAGCAAATGCAACGAGTCTCTC 2232 Query 33737 TCCATAACCGGCGCTG--TCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33790 || || ||| | | || ||||| | ||||| |||||||||||||| Sbjct 2233 CGCAAAAGAAGCGTCGGAACTTGCGATCCAACGAAGGGCCCAGTCGGCCTTCTTTTT 2289 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 ||| ||||| |||| | ||||| || ||||||||| |||||||||||||||||||| Sbjct 2383 ATCCTTAACGTAAGAGTTAATCAACAGCGAATACATTTCAGAATGAATGTTTTCAATGGC 2442 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || || ||||| | |||||| | || || |||||| Sbjct 2443 TATTTGGAAACCATAAAAACAGCGAGCCTCTGGAACTTGAACTTCT 2488 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || || || |||||||||||||| || ||||||| || || | | ||| |||||||| Sbjct 2715 ACCTCCTCAACTGTCCAAAATGAAGCAACTGCCTTCTTGTAAAATTGCCATATGTCATGG 2774 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 |||| ||| |||||||| ||||| | |||||| ||| Sbjct 2775 TATTTGATGGGGAAAATGACAAAACGATTTGGGTTT 2810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629544353634240