Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq30328 87.8 3e-12
>seq30328
Length=6095
Score = 87.8 bits (96), Expect = 3e-12
Identities = 127/177 (72%), Gaps = 3/177 (2%)
Strand=Plus/Plus
Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054
||||| ||||||| ||| || ||||||| ||||| || |||||||||||||| ||
Sbjct 2113 AATTAATTCGTTGCTGTGCGTCAGACCGGGCAAAAGGCCTCGTTTTTTAAGCCAAAAAAT 2172
Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114
| ||||| ||| || ||||| || || || || || ||||| ||||| ||||||||
Sbjct 2173 TGCAGCAAAACTCCCCGAGAAGAAAATCCCCTCAACCGCAGCAAATGCAACGAGTCTCTC 2232
Query 50115 TCCATAACTGGCGCTG--TCATG-TATCCACTTTTGAGCCCAATCGGCCTTCttttt 50168
|| || ||| | | || ||||| | ||||| ||||||||||||||
Sbjct 2233 CGCAAAAGAAGCGTCGGAACTTGCGATCCAACGAAGGGCCCAGTCGGCCTTCTTTTT 2289
Score = 86.0 bits (94), Expect = 9e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| || || |||||||||||||| || ||||||| || || | | ||| ||||||||
Sbjct 2714 TACCTCCTCAACTGTCCAAAATGAAGCAACTGCCTTCTTGTAAAATTGCCATATGTCATG 2773
Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
|||| ||| |||||||| ||||| | |||||| |||
Sbjct 2774 GTATTTGATGGGGAAAATGACAAAACGATTTGGGTTT 2810
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
||| ||||| |||| | ||||| || ||||||||| ||||||||||||||||||||
Sbjct 2383 ATCCTTAACGTAAGAGTTAATCAACAGCGAATACATTTCAGAATGAATGTTTTCAATGGC 2442
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || || ||||| | |||||| | || || ||||||
Sbjct 2443 TATTTGGAAACCATAAAAACAGCGAGCCTCTGGAACTTGAACTTCT 2488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717957179081120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |