Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq30328 87.8 3e-12 >seq30328 Length=6095 Score = 87.8 bits (96), Expect = 3e-12 Identities = 127/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054 ||||| ||||||| ||| || ||||||| ||||| || |||||||||||||| || Sbjct 2113 AATTAATTCGTTGCTGTGCGTCAGACCGGGCAAAAGGCCTCGTTTTTTAAGCCAAAAAAT 2172 Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 | ||||| ||| || ||||| || || || || || ||||| ||||| |||||||| Sbjct 2173 TGCAGCAAAACTCCCCGAGAAGAAAATCCCCTCAACCGCAGCAAATGCAACGAGTCTCTC 2232 Query 50115 TCCATAACTGGCGCTG--TCATG-TATCCACTTTTGAGCCCAATCGGCCTTCttttt 50168 || || ||| | | || ||||| | ||||| |||||||||||||| Sbjct 2233 CGCAAAAGAAGCGTCGGAACTTGCGATCCAACGAAGGGCCCAGTCGGCCTTCTTTTT 2289 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| || || |||||||||||||| || ||||||| || || | | ||| |||||||| Sbjct 2714 TACCTCCTCAACTGTCCAAAATGAAGCAACTGCCTTCTTGTAAAATTGCCATATGTCATG 2773 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 |||| ||| |||||||| ||||| | |||||| ||| Sbjct 2774 GTATTTGATGGGGAAAATGACAAAACGATTTGGGTTT 2810 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 ||| ||||| |||| | ||||| || ||||||||| |||||||||||||||||||| Sbjct 2383 ATCCTTAACGTAAGAGTTAATCAACAGCGAATACATTTCAGAATGAATGTTTTCAATGGC 2442 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || || ||||| | |||||| | || || |||||| Sbjct 2443 TATTTGGAAACCATAAAAACAGCGAGCCTCTGGAACTTGAACTTCT 2488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717957179081120