Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 93.3 3e-14
seq10457 86.0 5e-12
>seq25885
Length=2931
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960
||||| |||| ||| |||||| || | ||||| |||| ||| || ||| |||| ||
Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845
Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020
| ||||||||||| || |||| || || ||||| | ||| || || || || || |
Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905
Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079
||| | || || || | || ||||| | ||| ||| || || | || || |||||
Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTC-CGAGCTCTCCACCTCCAAAGTGATCGTTTT 964
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || | || ||||| |||||||||||
Sbjct 965 GCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq10457
Length=1107
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940
|||| || || || | | ||| | || | |||| |||||| |||||| ||| || |
Sbjct 729 CGCCGCCCCGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAG 670
Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000
||| || || |||| || | |||||||||||||||| ||||||||| ||||| || |
Sbjct 669 CCAACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGG 610
Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059
| | || || || || ||||| | || || | | || |||| | || ||
Sbjct 609 GAATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTC-CATGCTGTCC 551
Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| || | ||| || ||| ||||| | |||||| | ||||||||||||
Sbjct 550 ACCTCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381208279229064
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |