Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq25885 93.3 3e-14 seq10457 86.0 5e-12 >seq25885 Length=2931 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| |||||| || | ||||| |||| ||| || ||| |||| || Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||||||||| || |||| || || ||||| | ||| || || || || || | Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| | || || || | || ||||| | ||| ||| || || | || || ||||| Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTC-CGAGCTCTCCACCTCCAAAGTGATCGTTTT 964 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || ||||| ||||||||||| Sbjct 965 GCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq10457 Length=1107 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| || || || | | ||| | || | |||| |||||| |||||| ||| || | Sbjct 729 CGCCGCCCCGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAG 670 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 ||| || || |||| || | |||||||||||||||| ||||||||| ||||| || | Sbjct 669 CCAACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGG 610 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | | || || || || ||||| | || || | | || |||| | || || Sbjct 609 GAATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTC-CATGCTGTCC 551 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | ||| || ||| ||||| | |||||| | |||||||||||| Sbjct 550 ACCTCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381208279229064