Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq25885 87.8 1e-12 seq10457 86.0 5e-12 >seq25885 Length=2931 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||| |||||||| || || ||||| || |||| ||| ||||||| Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || || | || || | ||||||||| || |||||||| ||||| Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | ||||| || | || |||| || | || || ||||| Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTC-CGAGCTCTCCACCTCCAAAGTGATCGTTTT 964 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || || ||||||||||| Sbjct 965 GCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq10457 Length=1107 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || | |||||| || | | ||| || |||| ||| | ||||||| Sbjct 710 CACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCCAACGTTCGGCCGTCCTC 651 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| ||| | || ||| ||||| |||| | |||||| ||||| | Sbjct 650 GAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCCTCCTTGTCAGT 591 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCT--CCGTTTCGACGGTAATGGTT 19009 || ||| | || || | ||||| | || || ||| || || | || ||| | Sbjct 590 GATCTTCCGCTTCACATTCTCGACACTGTC--CATGCTGTCCACCTCCAGCGTGATGACT 533 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || |||||||||| |||||||||||| Sbjct 532 TTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414397434150952