Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 87.8 1e-12
seq10457 86.0 5e-12
>seq25885
Length=2931
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | ||| |||||||| || || ||||| || |||| ||| |||||||
Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || || | || || | ||||||||| || |||||||| |||||
Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| || || | | | ||||| || | || |||| || | || || |||||
Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTC-CGAGCTCTCCACCTCCAAAGTGATCGTTTT 964
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || || || || || |||||||||||
Sbjct 965 GCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq10457
Length=1107
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||| | ||| | || | |||||| || | | ||| || |||| ||| | |||||||
Sbjct 710 CACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCCAACGTTCGGCCGTCCTC 651
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||||| || ||| ||| | || ||| ||||| |||| | |||||| ||||| |
Sbjct 650 GAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCCTCCTTGTCAGT 591
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCT--CCGTTTCGACGGTAATGGTT 19009
|| ||| | || || | ||||| | || || ||| || || | || ||| |
Sbjct 590 GATCTTCCGCTTCACATTCTCGACACTGTC--CATGCTGTCCACCTCCAGCGTGATGACT 533
Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || || |||||||||| ||||||||||||
Sbjct 532 TTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414397434150952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |