Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq33473 91.5 2e-14
seq34313 86.0 1e-12
>seq33473
Length=10436
Score = 91.5 bits (100), Expect = 2e-14
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||| |||||||||||||
Sbjct 4076 CTCCGTGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTTTGGCTCGTCGTGGG 4017
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| | || || || |||| || |||| ||| || ||||| | |||
Sbjct 4016 GGCGTCAAGCGCATTTCCGGCCTGATCTACGAGGAGACTCGCTCAGTGCTGAAGGTGTTC 3957
Query 16574 CTCAAGACCGTTATCCATGATGC 16596
| ||| || |||| ||| ||
Sbjct 3956 TTGGAGAATGTCATCCGTGACGC 3934
>seq34313
Length=13579
Score = 86.0 bits (94), Expect = 1e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 16465 CATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524
||||||||| ||||||||||| || ||||| ||| |||| |||||||| || ||||||||
Sbjct 1 CATCCAAGGCATCACCAAGCCGGCCATCCGCCGTTTGGCCCGTCGTGGAGGCGTCAAGCG 60
Query 16525 TGTCTCTGGATTGGTCTATGAAGAGATTCG 16554
|||| || || |||| || |||| |||
Sbjct 61 CATCTCCGGCCTGATCTACGAGGAGACTCG 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79043466232644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |