Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq33473 91.5 2e-14 seq34313 86.0 1e-12 >seq33473 Length=10436 Score = 91.5 bits (100), Expect = 2e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||| ||||||||||||| Sbjct 4076 CTCCGTGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTTTGGCTCGTCGTGGG 4017 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | || || || |||| || |||| ||| || ||||| | ||| Sbjct 4016 GGCGTCAAGCGCATTTCCGGCCTGATCTACGAGGAGACTCGCTCAGTGCTGAAGGTGTTC 3957 Query 16574 CTCAAGACCGTTATCCATGATGC 16596 | ||| || |||| ||| || Sbjct 3956 TTGGAGAATGTCATCCGTGACGC 3934 >seq34313 Length=13579 Score = 86.0 bits (94), Expect = 1e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 16465 CATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 ||||||||| ||||||||||| || ||||| ||| |||| |||||||| || |||||||| Sbjct 1 CATCCAAGGCATCACCAAGCCGGCCATCCGCCGTTTGGCCCGTCGTGGAGGCGTCAAGCG 60 Query 16525 TGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 |||| || || |||| || |||| ||| Sbjct 61 CATCTCCGGCCTGATCTACGAGGAGACTCG 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79043466232644