Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq30328 84.2 3e-11 >seq30328 Length=6095 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398 ||||| ||||||| ||| || ||||||| ||||| || |||||||||||||| || Sbjct 2113 AATTAATTCGTTGCTGTGCGTCAGACCGGGCAAAAGGCCTCGTTTTTTAAGCCAAAAAAT 2172 Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 | ||| || || || ||||| || || || || |||||||| |||| |||||||| Sbjct 2173 TGCAGCAAAACTCCCCGAGAAGAAAATCCCCTCAACCGCAGCAAATGCAACGAGTCTCTC 2232 Query 33459 TCCATAACCGGCGCTG--TCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 || || ||| | | || ||||| | ||||| |||||||||||||| Sbjct 2233 CGCAAAAGAAGCGTCGGAACTTGCGATCCAACGAAGGGCCCAGTCGGCCTTCTTTTT 2289 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 ||| ||||| |||| | ||||| || ||||||||| |||||||||||||||||||| Sbjct 2383 ATCCTTAACGTAAGAGTTAATCAACAGCGAATACATTTCAGAATGAATGTTTTCAATGGC 2442 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || || ||||| | |||||| | || || |||||| | ||| || || Sbjct 2443 TATTTGGAAACCATAAAAACAGCGAGCCTCTGGAACTTGAACTTCTTGAGCAAAGCGCTC 2502 Query 33684 CGCC 33687 | || Sbjct 2503 CACC 2506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622676934357280