Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq25885 96.9 3e-15 seq10457 91.5 1e-13 seq28651 82.4 7e-11 >seq25885 Length=2931 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || ||| | ||||| | || |||||| || Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||| | || ||||| || ||| ||||| || || |||| || || || Sbjct 934 GACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAG 875 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || ||| | || || ||||||||||| | || || | || || ||| ||| ||||| Sbjct 874 CAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAAC 815 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 || || || || |||||||| || || || || | || | || |||||| Sbjct 814 ATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGGAAAT 764 >seq10457 Length=1107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || | || ||||||||||| ||| |||||| | || ||||| Sbjct 500 AATGCAAATTTTCATCAAAACTTTGACCGGCAAAGTCATCACGCTGGAGGTGGACAGCAT 559 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||| | ||||| |||||| || ||||||||||| || || ||||| |||| || Sbjct 560 GGACAGTGTCGAGAATGTGAAGCGGAAGATCACTGACAAGGAGGGCATTCCCGCTGATCA 619 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||||||||||| | || || | || || ||| || ||| Sbjct 620 TCAGCGATTGGTTTTTGCCGGCAAACAGCTCGAGGACGGCCGAACGTTGGCTGACTACGG 679 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | | || || || |||| |||| | ||||| Sbjct 680 TGTGCAGAAGGAGGCCACTGTACACCTTGTGCT 712 >seq28651 Length=4159 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | ||||| || | ||||| ||||||| ||| || Sbjct 1150 AATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1209 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 1210 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1269 Query 25118 ACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| | || || || || ||| Sbjct 1270 ACAGCGTCTCATCTTCGCTGGTAAA 1294 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | ||||| || | ||||| ||||||| ||| || Sbjct 1424 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1483 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 1484 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1543 Query 25118 ACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| | || || || || ||| Sbjct 1544 ACAGCGTCTCATCTTCGCTGGTAAA 1568 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | ||||| || | ||||| ||||||| ||| || Sbjct 1698 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAG 1757 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 1758 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1817 Query 25118 ACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| | || || || || ||| Sbjct 1818 ACAGCGTCTCATCTTCGCTGGTAAA 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433144700631020