Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 125 6e-24
seq28651 84.2 2e-11
seq30328 82.4 6e-11
>seq25885
Length=2931
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || || || || || |||||| ||||| | || ||||| | | |
Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || |||||| || | || || || |||||||||||||| |||| || |||||
Sbjct 934 GACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAG 875
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || || |||||||||||| | ||||| || || | |||| ||||||
Sbjct 874 CAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAAC 815
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 814 ATACAGAAGGAGTCCAC 798
>seq28651
Length=4159
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | ||||| || ||| ||||||| ||||| || | | |
Sbjct 1699 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAGC 1758
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || | || || || || ||||||||||| || ||||| || |||
Sbjct 1759 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1818
Query 22339 CAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || || || || |||
Sbjct 1819 CAGCGTCTCATCTTCGCTGGTAAA 1842
>seq30328
Length=6095
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 117081 GTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGGT 117140
|| || || |||||||| || || ||||||||||| || |||| | || | |||
Sbjct 2208 GTTGAGGGGATTTTCTTCTCGGGGAGTTTTGCTGCAATTTTTTGGCTTAAAAAACGAGGC 2149
Query 117141 CTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTAC 117195
|| |||| ||||| ||| |||||||||||||| ||||||||||||| || ||
Sbjct 2148 CTTTTGCCCGGTCTGACGCACAGCAACGAATTAATTTCGCGTGACGAAGTTTGAC 2094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419550453482020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |