Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25885 125 6e-24 seq28651 84.2 2e-11 seq30328 82.4 6e-11 >seq25885 Length=2931 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || |||||| ||||| | || ||||| | | | Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || |||||| || | || || || |||||||||||||| |||| || ||||| Sbjct 934 GACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAG 875 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || |||||||||||| | ||||| || || | |||| |||||| Sbjct 874 CAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAAC 815 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 814 ATACAGAAGGAGTCCAC 798 >seq28651 Length=4159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || ||| ||||||| ||||| || | | | Sbjct 1699 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAGC 1758 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| || ||||| || ||| Sbjct 1759 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1818 Query 22339 CAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || || || || ||| Sbjct 1819 CAGCGTCTCATCTTCGCTGGTAAA 1842 >seq30328 Length=6095 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 117081 GTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGGT 117140 || || || |||||||| || || ||||||||||| || |||| | || | ||| Sbjct 2208 GTTGAGGGGATTTTCTTCTCGGGGAGTTTTGCTGCAATTTTTTGGCTTAAAAAACGAGGC 2149 Query 117141 CTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTAC 117195 || |||| ||||| ||| |||||||||||||| ||||||||||||| || || Sbjct 2148 CTTTTGCCCGGTCTGACGCACAGCAACGAATTAATTTCGCGTGACGAAGTTTGAC 2094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419550453482020