Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25885 129 1e-24 seq28651 123 5e-23 seq33636 116 7e-21 seq4181 116 7e-21 seq26788 113 8e-20 seq30320 109 1e-18 seq18571 95.1 2e-14 seq18250 89.7 9e-13 >seq25885 Length=2931 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290 |||||| || || || || | |||||||| ||||||||||| || || ||||| || || Sbjct 764 ATTTCCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTC 823 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 || | || | || || || | ||| || |||||||| || || | ||| || || || Sbjct 824 GGCCAACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGG 883 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 |||| ||| ||||||||||| ||||| | ||| || || | ||||| | || Sbjct 884 CGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTC 943 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 944 CACCTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq28651 Length=4159 Score = 123 bits (136), Expect = 5e-23 Identities = 117/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| ||||| | |||||||| ||||| ||||| |||||||| || ||||| Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || |||||||||||| ||| | || ||||| | |||||| || || || || Sbjct 1233 GCCTTCACATTCTCGATGGTGTC-GCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175 Query 68438 GAGGGTCTTGACGAATATCTGCATTAT 68464 |||||||||||| || || |||||||| Sbjct 1174 GAGGGTCTTGACAAAGATTTGCATTAT 1148 Score = 114 bits (126), Expect = 2e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| ||||| | |||||||| ||||| ||||| |||||||| || ||||| Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || |||||||||||| ||| | || ||||| | |||||| || || || || Sbjct 1507 GCCTTCACATTCTCGATGGTGTC-GCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||| ||||| || || ||||||||| Sbjct 1448 GAGAGTCTTCACAAAGATCTGCATT 1424 Score = 111 bits (122), Expect = 3e-19 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| ||||| | |||||||| ||||| ||||| |||||||| || ||||| Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || |||||||||||| ||| | || ||||| | ||||| || || || || Sbjct 1781 GCCTTCACATTCTCGATGGTGTC-GCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||| ||||| || || ||||||||| Sbjct 1722 GAGAGTCTTCACAAAGATCTGCATT 1698 >seq33636 Length=8621 Score = 116 bits (128), Expect = 7e-21 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || ||||| || || ||||| |||||||| || ||||| || Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || ||||| | |||||||||||| || ||||| Sbjct 4997 TTCACGTTCTCGATGGTGTC-GCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAG 4939 Query 68441 GGTCTTGACGAATATCTGCAT 68461 ||||||||||| |||||||| Sbjct 4938 CGTCTTGACGAAGATCTGCAT 4918 Score = 104 bits (114), Expect = 4e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||| | || ||||| || || ||||| |||||||| || ||||| || Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || || || | ||||||||| || || ||||| Sbjct 4711 TTCACGTTCTCGATGGTGTC-GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAG 4653 Query 68441 GGTCTTGACGAATATCTGCATTAT 68464 || |||||||| || ||||| || Sbjct 4652 AGTTTTGACGAAGATTTGCATGAT 4629 >seq4181 Length=1006 Score = 116 bits (128), Expect = 7e-21 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || ||||| || || ||||| |||||||| || ||||| || Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || ||||| | |||||||||||| || ||||| Sbjct 823 TTCACGTTCTCGATGGTGTC-GCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAG 765 Query 68441 GGTCTTGACGAATATCTGCAT 68461 ||||||||||| |||||||| Sbjct 764 CGTCTTGACGAAGATCTGCAT 744 Score = 104 bits (114), Expect = 4e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||| | || ||||| || || ||||| |||||||| || ||||| || Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || || || | ||||||||| || || ||||| Sbjct 537 TTCACGTTCTCGATGGTGTC-GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAG 479 Query 68441 GGTCTTGACGAATATCTGCATTAT 68464 || |||||||| || ||||| || Sbjct 478 AGTTTTGACGAAGATTTGCATGAT 455 >seq26788 Length=2620 Score = 113 bits (124), Expect = 8e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || ||||| || |||||||| |||||||| || ||||| || Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || || || | ||||||||| || || ||||| Sbjct 2188 TTCACGTTCTCGATGGTGTC-GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAG 2130 Query 68441 GGTCTTGACGAATATCTGCAT 68461 ||||||||||| |||||||| Sbjct 2129 CGTCTTGACGAAGATCTGCAT 2109 Score = 100 bits (110), Expect = 5e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || ||||| || || ||||| |||||||| || ||||| || Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || || || | ||||||||| || || ||||| Sbjct 1904 TTCACGTTCTCGATGGTGTC-GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAG 1846 Query 68441 GGTCTTGACGAATATCTGCATTAT 68464 || |||||||| || ||||| || Sbjct 1845 AGTTTTGACGAAGATTTGCATGAT 1822 >seq30320 Length=5461 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||| | || ||||| || || ||||| |||||||| || ||||| || Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| |||||||||||| | || ||||| | |||||||| || || ||||| Sbjct 5300 TTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGAGC 5359 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| |||||||| Sbjct 5360 GTCTTGACGAAGATCTGCAT 5379 >seq18571 Length=770 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| ||||| | |||||||| || ||||| || | |||||| || ||||| || Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||||||| | || ||||| | ||||||||| || || ||||| Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 457 Query 68442 GTCTTGACGAATATCTG---CATTAT 68464 || |||||||| || || |||||| Sbjct 456 GTTTTGACGAAAATTTGGAACATTAT 431 >seq18250 Length=1204 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || || |||| |||||||||| Sbjct 75 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 134 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 135 CCCGCATCGGGC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921222554121760