Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq28651 102 7e-17
>seq28651
Length=4159
Score = 102 bits (112), Expect = 7e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298
|||||||||| |||||||||||||||||||||| || ||||| || ||||| |||||
Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509
Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358
|| | | || | ||||||| | | || || || | ||| | ||| ||||||||
Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449
Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382
||||| || ||||| ||||||||
Sbjct 1448 GAGAGTCTTCACAAAGATCTGCAT 1425
Score = 98.7 bits (108), Expect = 8e-16
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298
|||||||||| |||||||||||||||||||||| || ||||| || ||||| |||||
Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783
Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358
|| | | || | ||||||| | | || || || | || | ||| ||||||||
Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723
Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382
||||| || ||||| ||||||||
Sbjct 1722 GAGAGTCTTCACAAAGATCTGCAT 1699
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298
|||||||||| |||||||||||||||||||||| || ||||| || ||||| |||||
Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235
Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358
|| | | || | ||||||| | | || || || | ||| | ||| ||||||||
Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175
Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382
|| || || ||||| || |||||
Sbjct 1174 GAGGGTCTTGACAAAGATTTGCAT 1151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419956681573296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |