Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq28651 102 7e-17 >seq28651 Length=4159 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 |||||||||| |||||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | || | ||||||| | | || || || | ||| | ||| |||||||| Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || ||||| |||||||| Sbjct 1448 GAGAGTCTTCACAAAGATCTGCAT 1425 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 |||||||||| |||||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | || | ||||||| | | || || || | || | ||| |||||||| Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || ||||| |||||||| Sbjct 1722 GAGAGTCTTCACAAAGATCTGCAT 1699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 |||||||||| |||||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | || | ||||||| | | || || || | ||| | ||| |||||||| Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| || ||||| Sbjct 1174 GAGGGTCTTGACAAAGATTTGCAT 1151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419956681573296