Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq28651 127 5e-24 seq33636 118 2e-21 seq4181 118 2e-21 seq30320 113 1e-19 seq26788 111 4e-19 seq20723 105 2e-17 seq19842 100 7e-16 seq29861 96.9 8e-15 seq18571 96.9 8e-15 seq25885 91.5 3e-13 >seq28651 Length=4159 Score = 127 bits (140), Expect = 5e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || |||||||| ||||||||||| |||||| || || || |||||||| || Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||| ||||| || || || | ||||||| || |||||||| ||||||||||| ||||| Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 |||||||| || || ||||||||| Sbjct 1448 GAGAGTCTTCACAAAGATCTGCATT 1424 Score = 127 bits (140), Expect = 5e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || |||||||| ||||||||||| |||||| || || || |||||||| || Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||| ||||| || || || | ||||||| || |||||||| ||||||||||| ||||| Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723 Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474 |||||||| || || ||||||||| Sbjct 1722 GAGAGTCTTCACAAAGATCTGCATT 1698 Score = 125 bits (138), Expect = 2e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || |||||||| ||||||||||| |||||| || || || |||||||| || Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||| ||||| || || || | ||||||| || |||||||| ||||||||||| ||||| Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175 Query 288450 CAGAGTCTTGACGAATATCTGCATTAT 288476 || |||||||| || || |||||||| Sbjct 1174 GAGGGTCTTGACAAAGATTTGCATTAT 1148 >seq33636 Length=8621 Score = 118 bits (130), Expect = 2e-21 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || |||||| || |||||||| || ||||| || ||||| || || || ||| Sbjct 5067 TCAAATTGTA--CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 5010 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| |||||||||||||| || || | ||||||| || |||||||| ||||| || Sbjct 5009 TGGATCTTCGCTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTT 4950 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || ||||||||||| |||||||| Sbjct 4949 TTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 4918 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| || ||||| || ||||| || || || |||||||| |||||| Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||||||| || || || || ||||| ||||||||||| ||| Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652 Query 288454 GTCTTGACGAATATCTGCATTAT 288476 || |||||||| || ||||| || Sbjct 4651 GTTTTGACGAAGATTTGCATGAT 4629 >seq4181 Length=1006 Score = 118 bits (130), Expect = 2e-21 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || |||||| || |||||||| || ||||| || ||||| || || || ||| Sbjct 893 TCAAATTGTA--CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 836 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| |||||||||||||| || || | ||||||| || |||||||| ||||| || Sbjct 835 TGGATCTTCGCTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTT 776 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || ||||||||||| |||||||| Sbjct 775 TTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 744 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| || ||||| || ||||| || || || |||||||| |||||| Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||||||| || || || || ||||| ||||||||||| ||| Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478 Query 288454 GTCTTGACGAATATCTGCATTAT 288476 || |||||||| || ||||| || Sbjct 477 GTTTTGACGAAGATTTGCATGAT 455 >seq30320 Length=5461 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| || ||||| || ||||| || || || |||||||| |||||| Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | || |||| || ||||| || ||||| ||||||||||| || Sbjct 5300 TTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGAGC 5359 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| Sbjct 5360 GTCTTGACGAAGATCTGCAT 5379 >seq26788 Length=2620 Score = 111 bits (122), Expect = 4e-19 Identities = 111/143 (78%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||| || ||||| || ||||| || || || || |||||||| ||| Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGG---TCTGGCGGAATGCCCTCCTTGTCCTGGATCTTC 2192 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| || || | ||||||| || || || || ||||| ||||||||||| Sbjct 2191 GCTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 2132 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| |||||||| Sbjct 2131 AGCGTCTTGACGAAGATCTGCAT 2109 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| || ||||| || ||||| || || || |||||||| |||||| Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||||||| || || || || ||||| ||||||||||| ||| Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845 Query 288454 GTCTTGACGAATATCTGCATTAT 288476 || |||||||| || ||||| || Sbjct 1844 GTTTTGACGAAGATTTGCATGAT 1822 >seq20723 Length=574 Score = 105 bits (116), Expect = 2e-17 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || || |||||||| || ||||| || || |||||||| |||||| Sbjct 368 CCCGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCT 309 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||||||| || ||||| || ||||| ||||||||||| ||| Sbjct 308 TTCACATTCTCGATGGGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 249 Query 288454 GTCTTGACGAATATCTG---CATTATGTT 288479 || |||||||| || || |||||| || Sbjct 248 GTTTTGACGAAAATTTGGAACATTATATT 220 >seq19842 Length=1839 Score = 100 bits (110), Expect = 7e-16 Identities = 112/149 (75%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || || |||||||| || ||||| || || ||||||| |||||| Sbjct 1493 CCCGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTCCTTGCCCTGGATCTTCGCT 1552 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | ||||||| || ||||| || ||||| ||||||||||| ||| Sbjct 1553 TTCACATTCTCGATGGGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 1612 Query 288454 GTCTTGACGAATATCTG---CATTATGTT 288479 || |||||||| || || |||||| || Sbjct 1613 GTTTTGACGAAAATTTGGAACATTATATT 1641 >seq29861 Length=4039 Score = 96.9 bits (106), Expect = 8e-15 Identities = 93/119 (78%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || ||||| ||||||||||| || || || | ||||||| || Sbjct 3876 GGAATTCCCTCCTTGTCATGGATCTTCGCTTTCACATTCTCGATGGGGTCGCTCGCCTCG 3935 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG---CATTATGTT 288479 ||||| || ||||| ||||||||||| ||||| |||||||| || || |||||| || Sbjct 3936 ACTTCAAGGGTGATGGTCTTCCCGGTGAGAGTTTTGACGAAAATTTGGAACATTATATT 3994 >seq18571 Length=770 Score = 96.9 bits (106), Expect = 8e-15 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || || |||||||| || ||||| | || |||||||| |||||| Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | || |||| || ||||| || ||||| ||||||||||| ||| Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 457 Query 288454 GTCTTGACGAATATCTG---CATTATGTT 288479 || |||||||| || || |||||| || Sbjct 456 GTTTTGACGAAAATTTGGAACATTATATT 428 >seq25885 Length=2931 Score = 91.5 bits (100), Expect = 3e-13 Identities = 162/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 ||| ||| || ||||| | || || | || | |||| || || || || || |||| Sbjct 763 CATTTCCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGT 822 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| | ||| |||||||| || | ||||| || ||||||||||| || || ||| Sbjct 823 CGGCCAACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCG 882 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 || | || || || || ||||| |||| ||||| || || | || || |||| Sbjct 883 GCGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTC- 941 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | |||||||| || || |||| ||||| ||||| || ||||| Sbjct 942 --TCCACCTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179129812112024