Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq28651 127 5e-24
seq33636 118 2e-21
seq4181 118 2e-21
seq30320 113 1e-19
seq26788 111 4e-19
seq20723 105 2e-17
seq19842 100 7e-16
seq29861 96.9 8e-15
seq18571 96.9 8e-15
seq25885 91.5 3e-13
>seq28651
Length=4159
Score = 127 bits (140), Expect = 5e-24
Identities = 115/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389
||| || |||||||| ||||||||||| |||||| || || || |||||||| ||
Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509
Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
||| ||||| || || || | ||||||| || |||||||| ||||||||||| |||||
Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449
Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474
|||||||| || || |||||||||
Sbjct 1448 GAGAGTCTTCACAAAGATCTGCATT 1424
Score = 127 bits (140), Expect = 5e-24
Identities = 115/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389
||| || |||||||| ||||||||||| |||||| || || || |||||||| ||
Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783
Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
||| ||||| || || || | ||||||| || |||||||| ||||||||||| |||||
Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723
Query 288450 CAGAGTCTTGACGAATATCTGCATT 288474
|||||||| || || |||||||||
Sbjct 1722 GAGAGTCTTCACAAAGATCTGCATT 1698
Score = 125 bits (138), Expect = 2e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389
||| || |||||||| ||||||||||| |||||| || || || |||||||| ||
Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235
Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
||| ||||| || || || | ||||||| || |||||||| ||||||||||| |||||
Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175
Query 288450 CAGAGTCTTGACGAATATCTGCATTAT 288476
|| |||||||| || || ||||||||
Sbjct 1174 GAGGGTCTTGACAAAGATTTGCATTAT 1148
>seq33636
Length=8621
Score = 118 bits (130), Expect = 2e-21
Identities = 118/152 (78%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381
|| |||||| || |||||||| || ||||| || ||||| || || || |||
Sbjct 5067 TCAAATTGTA--CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 5010
Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441
||||| |||||||||||||| || || | ||||||| || |||||||| ||||| ||
Sbjct 5009 TGGATCTTCGCTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTT 4950
Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| || ||||||||||| ||||||||
Sbjct 4949 TTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 4918
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||| || ||||| || ||||| || || || |||||||| ||||||
Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|||||||| || || | ||||||| || || || || ||||| ||||||||||| |||
Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652
Query 288454 GTCTTGACGAATATCTGCATTAT 288476
|| |||||||| || ||||| ||
Sbjct 4651 GTTTTGACGAAGATTTGCATGAT 4629
>seq4181
Length=1006
Score = 118 bits (130), Expect = 2e-21
Identities = 118/152 (78%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381
|| |||||| || |||||||| || ||||| || ||||| || || || |||
Sbjct 893 TCAAATTGTA--CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 836
Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441
||||| |||||||||||||| || || | ||||||| || |||||||| ||||| ||
Sbjct 835 TGGATCTTCGCTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTT 776
Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| || ||||||||||| ||||||||
Sbjct 775 TTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 744
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||| || ||||| || ||||| || || || |||||||| ||||||
Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|||||||| || || | ||||||| || || || || ||||| ||||||||||| |||
Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478
Query 288454 GTCTTGACGAATATCTGCATTAT 288476
|| |||||||| || ||||| ||
Sbjct 477 GTTTTGACGAAGATTTGCATGAT 455
>seq30320
Length=5461
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||| || ||||| || ||||| || || || |||||||| ||||||
Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|||||||| || || | || |||| || ||||| || ||||| ||||||||||| ||
Sbjct 5300 TTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGAGC 5359
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||||||||| ||||||||
Sbjct 5360 GTCTTGACGAAGATCTGCAT 5379
>seq26788
Length=2620
Score = 111 bits (122), Expect = 4e-19
Identities = 111/143 (78%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390
|| |||||||| || ||||| || ||||| || || || || |||||||| |||
Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGG---TCTGGCGGAATGCCCTCCTTGTCCTGGATCTTC 2192
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||||||| || || | ||||||| || || || || ||||| |||||||||||
Sbjct 2191 GCTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 2132
Query 288451 AGAGTCTTGACGAATATCTGCAT 288473
|| ||||||||||| ||||||||
Sbjct 2131 AGCGTCTTGACGAAGATCTGCAT 2109
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||| || ||||| || ||||| || || || |||||||| ||||||
Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|||||||| || || | ||||||| || || || || ||||| ||||||||||| |||
Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845
Query 288454 GTCTTGACGAATATCTGCATTAT 288476
|| |||||||| || ||||| ||
Sbjct 1844 GTTTTGACGAAGATTTGCATGAT 1822
>seq20723
Length=574
Score = 105 bits (116), Expect = 2e-17
Identities = 113/149 (76%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| ||||| || || |||||||| || ||||| || || |||||||| ||||||
Sbjct 368 CCCGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCT 309
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || || | ||||||| || ||||| || ||||| ||||||||||| |||
Sbjct 308 TTCACATTCTCGATGGGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 249
Query 288454 GTCTTGACGAATATCTG---CATTATGTT 288479
|| |||||||| || || |||||| ||
Sbjct 248 GTTTTGACGAAAATTTGGAACATTATATT 220
>seq19842
Length=1839
Score = 100 bits (110), Expect = 7e-16
Identities = 112/149 (75%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| ||||| || || |||||||| || ||||| || || ||||||| ||||||
Sbjct 1493 CCCGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTCCTTGCCCTGGATCTTCGCT 1552
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || || | ||||||| || ||||| || ||||| ||||||||||| |||
Sbjct 1553 TTCACATTCTCGATGGGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 1612
Query 288454 GTCTTGACGAATATCTG---CATTATGTT 288479
|| |||||||| || || |||||| ||
Sbjct 1613 GTTTTGACGAAAATTTGGAACATTATATT 1641
>seq29861
Length=4039
Score = 96.9 bits (106), Expect = 8e-15
Identities = 93/119 (78%), Gaps = 3/119 (3%)
Strand=Plus/Plus
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || || || ||||| ||||||||||| || || || | ||||||| ||
Sbjct 3876 GGAATTCCCTCCTTGTCATGGATCTTCGCTTTCACATTCTCGATGGGGTCGCTCGCCTCG 3935
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG---CATTATGTT 288479
||||| || ||||| ||||||||||| ||||| |||||||| || || |||||| ||
Sbjct 3936 ACTTCAAGGGTGATGGTCTTCCCGGTGAGAGTTTTGACGAAAATTTGGAACATTATATT 3994
>seq18571
Length=770
Score = 96.9 bits (106), Expect = 8e-15
Identities = 111/149 (74%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| ||||| || || |||||||| || ||||| | || |||||||| ||||||
Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || || | || |||| || ||||| || ||||| ||||||||||| |||
Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 457
Query 288454 GTCTTGACGAATATCTG---CATTATGTT 288479
|| |||||||| || || |||||| ||
Sbjct 456 GTTTTGACGAAAATTTGGAACATTATATT 428
>seq25885
Length=2931
Score = 91.5 bits (100), Expect = 3e-13
Identities = 162/235 (69%), Gaps = 6/235 (3%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
||| ||| || ||||| | || || | || | |||| || || || || || ||||
Sbjct 763 CATTTCCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGT 822
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|||| | ||| |||||||| || | ||||| || ||||||||||| || || |||
Sbjct 823 CGGCCAACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCG 882
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418
|| | || || || || ||||| |||| ||||| || || | || || ||||
Sbjct 883 GCGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTC- 941
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | |||||||| || || |||| ||||| ||||| || |||||
Sbjct 942 --TCCACCTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179129812112024
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