Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq28651 102 9e-17
seq33636 98.7 1e-15
seq4181 98.7 1e-15
seq25885 95.1 1e-14
seq30320 89.7 6e-13
seq26788 89.7 6e-13
>seq28651
Length=4159
Score = 102 bits (112), Expect = 9e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
||||||||||| ||||| ||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234
Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185
|| | || | | |||||||||| || || |||| ||||| || ||||| ||
Sbjct 1233 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1174
Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209
|| ||||| |||||||||||||||
Sbjct 1173 AGGGTCTTGACAAAGATTTGCATT 1150
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
||||||||||| ||||| ||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508
Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185
|| | || | | |||||||||| || || |||| ||||| || ||||| ||
Sbjct 1507 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1448
Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209
|| ||||| |||||||| ||||||
Sbjct 1447 AGAGTCTTCACAAAGATCTGCATT 1424
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
||||||||||| ||||| ||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782
Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185
|| | || | | |||||||||| || || |||| ||||| || ||||| ||
Sbjct 1781 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGTG 1722
Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209
|| ||||| |||||||| ||||||
Sbjct 1721 AGAGTCTTCACAAAGATCTGCATT 1698
>seq33636
Length=8621
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126
|||||||||| || || ||||||||||| | || | || |||||||||| ||| ||
Sbjct 5059 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 5000
Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186
||| | || | | |||||||||| || || |||| ||||||||||| || || |
Sbjct 4999 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGA 4940
Query 42187 GCGTCTTTACAAAGATTTGCAT 42208
||||||| || ||||| |||||
Sbjct 4939 GCGTCTTGACGAAGATCTGCAT 4918
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126
|||||||||| ||||| ||||||||||| | || | || |||||||||| ||| ||
Sbjct 4773 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 4714
Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186
||| | || | | |||||||||| || || || | |||||||| || || || |
Sbjct 4713 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 4654
Query 42187 GCGTCTTTACAAAGATTTGCAT 42208
| || || || |||||||||||
Sbjct 4653 GAGTTTTGACGAAGATTTGCAT 4632
>seq4181
Length=1006
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126
|||||||||| || || ||||||||||| | || | || |||||||||| ||| ||
Sbjct 885 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 826
Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186
||| | || | | |||||||||| || || |||| ||||||||||| || || |
Sbjct 825 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGA 766
Query 42187 GCGTCTTTACAAAGATTTGCAT 42208
||||||| || ||||| |||||
Sbjct 765 GCGTCTTGACGAAGATCTGCAT 744
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126
|||||||||| ||||| ||||||||||| | || | || |||||||||| ||| ||
Sbjct 599 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 540
Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186
||| | || | | |||||||||| || || || | |||||||| || || || |
Sbjct 539 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 480
Query 42187 GCGTCTTTACAAAGATTTGCAT 42208
| || || || |||||||||||
Sbjct 479 GAGTTTTGACGAAGATTTGCAT 458
>seq25885
Length=2931
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | ||| |||||| || || ||||| || |||| || || |||| ||
Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
||||| || || ||||| || || || ||||| || | || |||| ||||||||| |
Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176
|| || || | | |||| ||||| |||| ||||| || | ||||| |||
Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTT 962
Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||||||| | ||||| || || ||||||||
Sbjct 963 TTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq30320
Length=5461
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126
|||||||||| ||||| ||||||||||| | || | || |||||||||| ||| ||
Sbjct 5238 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 5297
Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186
||| | || | | ||||| |||| || || || | |||||||| || || || |
Sbjct 5298 CTTTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGA 5357
Query 42187 GCGTCTTTACAAAGATTTGCAT 42208
||||||| || ||||| |||||
Sbjct 5358 GCGTCTTGACGAAGATCTGCAT 5379
>seq26788
Length=2620
Score = 89.7 bits (98), Expect = 6e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126
|||||||||| || || ||||||||||| | || | || |||||||||| ||| ||
Sbjct 2250 TACCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCG 2191
Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186
||| | || | | |||||||||| || || || | |||||||| || || || |
Sbjct 2190 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 2131
Query 42187 GCGTCTTTACAAAGATTTGCAT 42208
||||||| || ||||| |||||
Sbjct 2130 GCGTCTTGACGAAGATCTGCAT 2109
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126
|||||||||| || || ||||||||||| | || | || |||||||||| ||| ||
Sbjct 1966 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 1907
Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186
||| | || | | |||||||||| || || || | |||||||| || || || |
Sbjct 1906 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 1847
Query 42187 GCGTCTTTACAAAGATTTGCAT 42208
| || || || |||||||||||
Sbjct 1846 GAGTTTTGACGAAGATTTGCAT 1825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542977127126720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |