Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq28651 102 9e-17 seq33636 98.7 1e-15 seq4181 98.7 1e-15 seq25885 95.1 1e-14 seq30320 89.7 6e-13 seq26788 89.7 6e-13 >seq28651 Length=4159 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||||||||| ||||| ||||| ||||| | ||| | || |||||||||| ||| || Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | || | | |||||||||| || || |||| ||||| || ||||| || Sbjct 1233 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1174 Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209 || ||||| ||||||||||||||| Sbjct 1173 AGGGTCTTGACAAAGATTTGCATT 1150 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||||||||| ||||| ||||| ||||| | ||| | || |||||||||| ||| || Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | || | | |||||||||| || || |||| ||||| || ||||| || Sbjct 1507 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1448 Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209 || ||||| |||||||| |||||| Sbjct 1447 AGAGTCTTCACAAAGATCTGCATT 1424 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||||||||| ||||| ||||| ||||| | ||| | || |||||||||| ||| || Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | || | | |||||||||| || || |||| ||||| || ||||| || Sbjct 1781 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGTG 1722 Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209 || ||||| |||||||| |||||| Sbjct 1721 AGAGTCTTCACAAAGATCTGCATT 1698 >seq33636 Length=8621 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||||||||| || || ||||||||||| | || | || |||||||||| ||| || Sbjct 5059 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 5000 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 ||| | || | | |||||||||| || || |||| ||||||||||| || || | Sbjct 4999 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGA 4940 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 ||||||| || ||||| ||||| Sbjct 4939 GCGTCTTGACGAAGATCTGCAT 4918 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||||||||| ||||| ||||||||||| | || | || |||||||||| ||| || Sbjct 4773 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 4714 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 ||| | || | | |||||||||| || || || | |||||||| || || || | Sbjct 4713 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 4654 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 | || || || ||||||||||| Sbjct 4653 GAGTTTTGACGAAGATTTGCAT 4632 >seq4181 Length=1006 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||||||||| || || ||||||||||| | || | || |||||||||| ||| || Sbjct 885 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 826 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 ||| | || | | |||||||||| || || |||| ||||||||||| || || | Sbjct 825 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGA 766 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 ||||||| || ||||| ||||| Sbjct 765 GCGTCTTGACGAAGATCTGCAT 744 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||||||||| ||||| ||||||||||| | || | || |||||||||| ||| || Sbjct 599 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 540 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 ||| | || | | |||||||||| || || || | |||||||| || || || | Sbjct 539 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 480 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 | || || || ||||||||||| Sbjct 479 GAGTTTTGACGAAGATTTGCAT 458 >seq25885 Length=2931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || || ||||| || |||| || || |||| || Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| || || ||||| || || || ||||| || | || |||| ||||||||| | Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || || || | | |||| ||||| |||| ||||| || | ||||| ||| Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTT 962 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||| | ||||| || || |||||||| Sbjct 963 TTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq30320 Length=5461 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||||||||| ||||| ||||||||||| | || | || |||||||||| ||| || Sbjct 5238 TACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 5297 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 ||| | || | | ||||| |||| || || || | |||||||| || || || | Sbjct 5298 CTTTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGA 5357 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 ||||||| || ||||| ||||| Sbjct 5358 GCGTCTTGACGAAGATCTGCAT 5379 >seq26788 Length=2620 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||||||||| || || ||||||||||| | || | || |||||||||| ||| || Sbjct 2250 TACCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCG 2191 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 ||| | || | | |||||||||| || || || | |||||||| || || || | Sbjct 2190 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 2131 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 ||||||| || ||||| ||||| Sbjct 2130 GCGTCTTGACGAAGATCTGCAT 2109 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 42067 TACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTT 42126 |||||||||| || || ||||||||||| | || | || |||||||||| ||| || Sbjct 1966 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 1907 Query 42127 GTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTA 42186 ||| | || | | |||||||||| || || || | |||||||| || || || | Sbjct 1906 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 1847 Query 42187 GCGTCTTTACAAAGATTTGCAT 42208 | || || || ||||||||||| Sbjct 1846 GAGTTTTGACGAAGATTTGCAT 1825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542977127126720