Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25885 122 8e-23 seq28651 104 2e-17 seq10457 104 2e-17 seq33636 91.5 1e-13 seq4181 91.5 1e-13 seq26788 84.2 2e-11 >seq25885 Length=2931 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||| ||||| || || || ||||| ||| ||| ||| || || || Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || ||| |||||| || |||||||| || || | |||||||||||| | Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || ||| ||| | | || || ||||||| ||||| || || | || | ||||||| Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTTTTG 965 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| || || || ||||| |||||| Sbjct 966 CCCGTCAATGTCTTCACGAAAATTTGCATG 995 >seq28651 Length=4159 Score = 104 bits (114), Expect = 2e-17 Identities = 125/168 (74%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 126953 CGAGAATCGTCTAGCT------GTTTT-CCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 ||||||| ||||||| ||||| |||||| |||| | ||||| || || || || Sbjct 1591 CGAGAAT-GTCTAGCAAAGGGAGTTTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGG 1533 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||| | | |||| |||||| | ||| || Sbjct 1532 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAAC 1473 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||| | ||| |||||||| ||||| || ||||| |||||||| Sbjct 1472 TTCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1425 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 ||| |||||| |||| | ||||| || || || || ||||||||||||||| ||| || Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783 Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | ||| | | |||| |||||| | ||| ||||||| || | ||| |||||||| Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723 Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| |||||||| Sbjct 1722 GAGAGTCTTCACAAAGATCTGCAT 1699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/168 (73%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 126953 CGAGAATCGTCTAGCT------GTTTT-CCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 ||||||| ||||||| ||||| |||||| |||| | ||||| || || || || Sbjct 1317 CGAGAAT-GTCTAGCAAAGGGAGTTTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGG 1259 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||| | | |||| |||||| | ||| || Sbjct 1258 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAAC 1199 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||| | ||| |||||||| || || || ||||| || ||||| Sbjct 1198 TTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1151 >seq10457 Length=1107 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || |||| |||| ||| | |||| || | ||| || || | | ||| || || Sbjct 727 CCGCCCCGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCC 668 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || |||||||| || || | | ||||||||| ||||| | || Sbjct 667 AACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGA 608 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||||| ||| |||| | | ||||| ||||| | || || || Sbjct 607 ATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACC 548 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||||||||| |||||| | ||||| ||||| Sbjct 547 TCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCAT 501 >seq33636 Length=8621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | |||||||| || || || ||||||||||||||| ||| ||| Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| |||||| | ||||||||||| ||| | ||||| ||||| || Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | |||||||| || || || ||||||||||||||| ||| ||| Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| |||||| | |||||| || | ||| | || || ||||| ||| Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652 Query 127094 GTTTTTACAAAAATCTGCATG 127114 ||||| || || || |||||| Sbjct 4651 GTTTTGACGAAGATTTGCATG 4631 >seq4181 Length=1006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | |||||||| || || || ||||||||||||||| ||| ||| Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| |||||| | ||||||||||| ||| | ||||| ||||| || Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 763 GTCTTGACGAAGATCTGCAT 744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | |||||||| || || || ||||||||||||||| ||| ||| Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| |||||| | |||||| || | ||| | || || ||||| ||| Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478 Query 127094 GTTTTTACAAAAATCTGCATG 127114 ||||| || || || |||||| Sbjct 477 GTTTTGACGAAGATTTGCATG 457 >seq26788 Length=2620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| |||| | |||||||| || || || ||||||||||||||| ||| ||| Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||| |||||| | |||||| || | ||| | || || ||||| ||| Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845 Query 127094 GTTTTTACAAAAATCTGCATG 127114 ||||| || || || |||||| Sbjct 1844 GTTTTGACGAAGATTTGCATG 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475294503977920