Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 122 8e-23
seq28651 104 2e-17
seq10457 104 2e-17
seq33636 91.5 1e-13
seq4181 91.5 1e-13
seq26788 84.2 2e-11
>seq25885
Length=2931
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | ||| ||||| || || || ||||| ||| ||| ||| || || ||
Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
|||||||| || ||| |||||| || |||||||| || || | |||||||||||| |
Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| ||| ||| | | || || ||||||| ||||| || || | || | |||||||
Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTTTTG 965
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| |||| || || || ||||| ||||||
Sbjct 966 CCCGTCAATGTCTTCACGAAAATTTGCATG 995
>seq28651
Length=4159
Score = 104 bits (114), Expect = 2e-17
Identities = 125/168 (74%), Gaps = 8/168 (5%)
Strand=Plus/Minus
Query 126953 CGAGAATCGTCTAGCT------GTTTT-CCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
||||||| ||||||| ||||| |||||| |||| | ||||| || || || ||
Sbjct 1591 CGAGAAT-GTCTAGCAAAGGGAGTTTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGG 1533
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| ||| ||| | | |||| |||||| | ||| ||
Sbjct 1532 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAAC 1473
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| ||| | ||| |||||||| ||||| || ||||| ||||||||
Sbjct 1472 TTCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1425
Score = 98.7 bits (108), Expect = 9e-16
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029
||| |||||| |||| | ||||| || || || || ||||||||||||||| ||| ||
Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783
Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| ||| | | |||| |||||| | ||| ||||||| || | ||| ||||||||
Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723
Query 127090 CAGAGTTTTTACAAAAATCTGCAT 127113
||||| || ||||| ||||||||
Sbjct 1722 GAGAGTCTTCACAAAGATCTGCAT 1699
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/168 (73%), Gaps = 8/168 (5%)
Strand=Plus/Minus
Query 126953 CGAGAATCGTCTAGCT------GTTTT-CCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
||||||| ||||||| ||||| |||||| |||| | ||||| || || || ||
Sbjct 1317 CGAGAAT-GTCTAGCAAAGGGAGTTTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGG 1259
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| ||| ||| | | |||| |||||| | ||| ||
Sbjct 1258 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAAC 1199
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| ||| | ||| |||||||| || || || ||||| || |||||
Sbjct 1198 TTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 1151
>seq10457
Length=1107
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || |||| |||| ||| | |||| || | ||| || || | | ||| || ||
Sbjct 727 CCGCCCCGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCC 668
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || || || |||||||| || || | | ||||||||| ||||| | ||
Sbjct 667 AACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGA 608
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|||||||||||||| ||||| ||| |||| | | ||||| ||||| | || || ||
Sbjct 607 ATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACC 548
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||||||||||| |||||| | ||||| |||||
Sbjct 547 TCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCAT 501
>seq33636
Length=8621
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| |||| | |||||||| || || || ||||||||||||||| ||| |||
Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998
Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093
|| | | |||| |||||| | ||||||||||| ||| | ||||| ||||| ||
Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938
Query 127094 GTTTTTACAAAAATCTGCAT 127113
|| || || || ||||||||
Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| |||| | |||||||| || || || ||||||||||||||| ||| |||
Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712
Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093
|| | | |||| |||||| | |||||| || | ||| | || || ||||| |||
Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652
Query 127094 GTTTTTACAAAAATCTGCATG 127114
||||| || || || ||||||
Sbjct 4651 GTTTTGACGAAGATTTGCATG 4631
>seq4181
Length=1006
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| |||| | |||||||| || || || ||||||||||||||| ||| |||
Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824
Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093
|| | | |||| |||||| | ||||||||||| ||| | ||||| ||||| ||
Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764
Query 127094 GTTTTTACAAAAATCTGCAT 127113
|| || || || ||||||||
Sbjct 763 GTCTTGACGAAGATCTGCAT 744
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| |||| | |||||||| || || || ||||||||||||||| ||| |||
Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538
Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093
|| | | |||| |||||| | |||||| || | ||| | || || ||||| |||
Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478
Query 127094 GTTTTTACAAAAATCTGCATG 127114
||||| || || || ||||||
Sbjct 477 GTTTTGACGAAGATTTGCATG 457
>seq26788
Length=2620
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| |||| | |||||||| || || || ||||||||||||||| ||| |||
Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905
Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093
|| | | |||| |||||| | |||||| || | ||| | || || ||||| |||
Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845
Query 127094 GTTTTTACAAAAATCTGCATG 127114
||||| || || || ||||||
Sbjct 1844 GTTTTGACGAAGATTTGCATG 1824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475294503977920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |