Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq31391 87.8 2e-12 >seq31391 Length=5529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 || || |||||||||||||||||||| | || || ||| |||| || || | |||| Sbjct 3512 CCAACAGCGTCAATTTCGTCAATGAACAGAATGCATGGTGCCTTTTTCCGCGCCATTTCA 3453 Query 12936 AAGATATCTCGCACTC-TCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 || || || || |||| || ||| || ||||| || |||||||||| ||| | || | Sbjct 3452 AACATGTCCCGAACTCGGCTAGGC-CCAACACCGACGAACATCTCCAAAAACTCGGAACC 3394 Query 12995 GGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 ||| ||| | ||| || || || || | ||| || || | ||| |||||| || || | Sbjct 3393 GGACACAGT-GATAAATGGCACATTTGCTTCGCCAGCAGTTGCTTTGGCGAGAAGAGTTT 3335 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 | || || || || || | ||||| ||||| Sbjct 3334 TACCAGTGCCCGGAGGGCCAGTCAGAAGAGCACC 3301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613241029901280