Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq31391 87.8 2e-12
>seq31391
Length=5529
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935
|| || |||||||||||||||||||| | || || ||| |||| || || | ||||
Sbjct 3512 CCAACAGCGTCAATTTCGTCAATGAACAGAATGCATGGTGCCTTTTTCCGCGCCATTTCA 3453
Query 12936 AAGATATCTCGCACTC-TCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994
|| || || || |||| || ||| || ||||| || |||||||||| ||| | || |
Sbjct 3452 AACATGTCCCGAACTCGGCTAGGC-CCAACACCGACGAACATCTCCAAAAACTCGGAACC 3394
Query 12995 GGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053
||| ||| | ||| || || || || | ||| || || | ||| |||||| || || |
Sbjct 3393 GGACACAGT-GATAAATGGCACATTTGCTTCGCCAGCAGTTGCTTTGGCGAGAAGAGTTT 3335
Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087
| || || || || || | ||||| |||||
Sbjct 3334 TACCAGTGCCCGGAGGGCCAGTCAGAAGAGCACC 3301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613241029901280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |