Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq25885 125 2e-23 seq18571 89.7 1e-12 seq28651 87.8 4e-12 seq20723 86.0 1e-11 seq19842 84.2 5e-11 >seq25885 Length=2931 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| || | ||||||||| ||||| || | ||| || Sbjct 783 AGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCC 842 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||||||||| || || ||||| ||||| || || || || Sbjct 843 TCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCT 902 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || || ||||| | | || || ||||| |||||||| Sbjct 903 TGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTT 962 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || ||||| |||||||| Sbjct 963 TTGCCCGTCAATGTCTTCACGAAAATTTG 991 >seq18571 Length=770 Score = 89.7 bits (98), Expect = 1e-12 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT-CTCGCTCCTGAATCTTTTG 199548 || ||||| ||||| ||||| |||||||| |||||| | || | ||||| ||||| Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTG-TCCTGGATCTTCGC 518 Query 199549 CTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 ||||| |||| |||||| | | || || || | ||||| ||||| || ||||| Sbjct 517 TTTCACATTCTCGATGGTGTCACTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAG 458 Query 199609 AGTTTTCACAAAAATTTGGTACATTTTA 199636 |||||| || ||||||||| ||||| || Sbjct 457 AGTTTTGACGAAAATTTGGAACATTATA 430 >seq28651 Length=4159 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||| |||||||| |||||||| |||| ||||||||| || | || Sbjct 1417 CGAAGACGCAGGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTT 1358 Query 199469 CTTCCATCTTCCAGCTGCTTTCC 199491 | ||||| |||||||||||||| Sbjct 1357 CGGCCATCCTCCAGCTGCTTTCC 1335 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| |||| |||||| | | || || || | ||||||||||| || ||| Sbjct 1507 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1448 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || Sbjct 1447 AGAGTCTTCACAAAGATCTG 1428 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||||||||||||||| |||||||| || || || ||||| ||||| Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| |||| |||||| | | || || || | ||||||||||| || ||| Sbjct 1781 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGTG 1722 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || Sbjct 1721 AGAGTCTTCACAAAGATCTG 1702 >seq20723 Length=574 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || ||||| ||||| ||||| |||||||| |||||| || ||||| ||||| Sbjct 368 CCCGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCT 309 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| |||| || ||| | | || || || | ||||| ||||| || |||||| Sbjct 308 TTCACATTCTCGATGGGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 249 Query 199610 GTTTTCACAAAAATTTGGTACATTTTA 199636 ||||| || ||||||||| ||||| || Sbjct 248 GTTTTGACGAAAATTTGGAACATTATA 222 >seq19842 Length=1839 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC-TCGCTCCTGAATCTTTTG 199548 || ||||| ||||| ||||| |||||||| |||||| || | || |||| ||||| Sbjct 1493 CCCGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTCCTTGC-CCTGGATCTTCGC 1551 Query 199549 CTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 ||||| |||| || ||| | | || || || | ||||| ||||| || ||||| Sbjct 1552 TTTCACATTCTCGATGGGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAG 1611 Query 199609 AGTTTTCACAAAAATTTGGTACATTTTA 199636 |||||| || ||||||||| ||||| || Sbjct 1612 AGTTTTGACGAAAATTTGGAACATTATA 1639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178397337985436