Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq25885 132 5e-26 seq33636 91.5 2e-13 seq26788 91.5 2e-13 seq4181 91.5 2e-13 seq28651 84.2 2e-11 seq30320 82.4 9e-11 >seq25885 Length=2931 Score = 132 bits (146), Expect = 5e-26 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||||| | || || |||| |||||||| ||||||||||| Sbjct 803 CTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAA 862 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || ||||| || | ||| |||| ||||||||| ||||||| |||| | | Sbjct 863 GATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATT 922 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 |||| ||||| |||| ||||| |||| ||||| ||||||||||||| || || Sbjct 923 GTCCACAGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTTTTGCCCGTCAATGTCTT 979 Query 46579 AACAAAGATTTGCAT 46593 || || |||||||| Sbjct 980 CACGAAAATTTGCAT 994 >seq33636 Length=8621 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| || | |||||||||||| | ||| | || |||||||||| ||||||| Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||||| || || || | |||||||| || || || || Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652 Query 46574 GTTTTAACAAAGATTTGCAT 46593 ||||| || ||||||||||| Sbjct 4651 GTTTTGACGAAGATTTGCAT 4632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| || | |||||||||||| | ||| | || |||||||||| ||||||| Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||||| || || || | ||||||||||| || || ||| Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || ||||| ||||| Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918 >seq26788 Length=2620 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| || | |||||||||||| | ||| | || |||||||||| ||||||| Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||||| || || || | |||||||| || || || || Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845 Query 46574 GTTTTAACAAAGATTTGCAT 46593 ||||| || ||||||||||| Sbjct 1844 GTTTTGACGAAGATTTGCAT 1825 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| || | |||||||||||| | ||| | || |||||||||| ||||||| Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||||| || || || | |||||||| || || || ||| Sbjct 2188 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGC 2129 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || ||||| ||||| Sbjct 2128 GTCTTGACGAAGATCTGCAT 2109 >seq4181 Length=1006 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| || | |||||||||||| | ||| | || |||||||||| ||||||| Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||||| || || || | |||||||| || || || || Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478 Query 46574 GTTTTAACAAAGATTTGCAT 46593 ||||| || ||||||||||| Sbjct 477 GTTTTGACGAAGATTTGCAT 458 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| || | |||||||||||| | ||| | || |||||||||| ||||||| Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | |||||||||| || || || | ||||||||||| || || ||| Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || ||||| ||||| Sbjct 763 GTCTTGACGAAGATCTGCAT 744 >seq28651 Length=4159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510 || || ||||| || | ||||| ||||| | || | || |||||||||| ||||||| Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234 Query 46511 TTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570 ||| | || | | |||||||||| || || || | ||||| || ||||| || Sbjct 1233 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1174 Query 46571 AGCGTTTTAACAAAGATTTGCATT 46594 || || || ||||||||||||||| Sbjct 1173 AGGGTCTTGACAAAGATTTGCATT 1150 >seq30320 Length=5461 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || ||||| || | |||||||||||| | ||| | || |||||||||| ||||||| Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | ||||| |||| || || || | |||||||| || || || ||| Sbjct 5300 TTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGAGC 5359 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || ||||| ||||| Sbjct 5360 GTCTTGACGAAGATCTGCAT 5379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564993171320160