Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 132 5e-26
seq33636 91.5 2e-13
seq26788 91.5 2e-13
seq4181 91.5 2e-13
seq28651 84.2 2e-11
seq30320 82.4 9e-11
>seq25885
Length=2931
Score = 132 bits (146), Expect = 5e-26
Identities = 147/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||||| | || || |||| |||||||| |||||||||||
Sbjct 803 CTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAA 862
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| || ||||| || | ||| |||| ||||||||| ||||||| |||| | |
Sbjct 863 GATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATT 922
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
|||| ||||| |||| ||||| |||| ||||| ||||||||||||| || ||
Sbjct 923 GTCCACAGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTTTTGCCCGTCAATGTCTT 979
Query 46579 AACAAAGATTTGCAT 46593
|| || ||||||||
Sbjct 980 CACGAAAATTTGCAT 994
>seq33636
Length=8621
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513
|| ||||| || | |||||||||||| | ||| | || |||||||||| |||||||
Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712
Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
|| | || | | |||||||||| || || || | |||||||| || || || ||
Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652
Query 46574 GTTTTAACAAAGATTTGCAT 46593
||||| || |||||||||||
Sbjct 4651 GTTTTGACGAAGATTTGCAT 4632
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513
|| ||||| || | |||||||||||| | ||| | || |||||||||| |||||||
Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998
Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
|| | || | | |||||||||| || || || | ||||||||||| || || |||
Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938
Query 46574 GTTTTAACAAAGATTTGCAT 46593
|| || || ||||| |||||
Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918
>seq26788
Length=2620
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513
|| ||||| || | |||||||||||| | ||| | || |||||||||| |||||||
Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905
Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
|| | || | | |||||||||| || || || | |||||||| || || || ||
Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845
Query 46574 GTTTTAACAAAGATTTGCAT 46593
||||| || |||||||||||
Sbjct 1844 GTTTTGACGAAGATTTGCAT 1825
Score = 86.0 bits (94), Expect = 7e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513
|| ||||| || | |||||||||||| | ||| | || |||||||||| |||||||
Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189
Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
|| | || | | |||||||||| || || || | |||||||| || || || |||
Sbjct 2188 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGC 2129
Query 46574 GTTTTAACAAAGATTTGCAT 46593
|| || || ||||| |||||
Sbjct 2128 GTCTTGACGAAGATCTGCAT 2109
>seq4181
Length=1006
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513
|| ||||| || | |||||||||||| | ||| | || |||||||||| |||||||
Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538
Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
|| | || | | |||||||||| || || || | |||||||| || || || ||
Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478
Query 46574 GTTTTAACAAAGATTTGCAT 46593
||||| || |||||||||||
Sbjct 477 GTTTTGACGAAGATTTGCAT 458
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513
|| ||||| || | |||||||||||| | ||| | || |||||||||| |||||||
Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824
Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
|| | || | | |||||||||| || || || | ||||||||||| || || |||
Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764
Query 46574 GTTTTAACAAAGATTTGCAT 46593
|| || || ||||| |||||
Sbjct 763 GTCTTGACGAAGATCTGCAT 744
>seq28651
Length=4159
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510
|| || ||||| || | ||||| ||||| | || | || |||||||||| |||||||
Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234
Query 46511 TTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570
||| | || | | |||||||||| || || || | ||||| || ||||| ||
Sbjct 1233 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1174
Query 46571 AGCGTTTTAACAAAGATTTGCATT 46594
|| || || |||||||||||||||
Sbjct 1173 AGGGTCTTGACAAAGATTTGCATT 1150
>seq30320
Length=5461
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513
|| ||||| || | |||||||||||| | ||| | || |||||||||| |||||||
Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299
Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573
|| | || | | ||||| |||| || || || | |||||||| || || || |||
Sbjct 5300 TTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGAGC 5359
Query 46574 GTTTTAACAAAGATTTGCAT 46593
|| || || ||||| |||||
Sbjct 5360 GTCTTGACGAAGATCTGCAT 5379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564993171320160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |