Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 111 2e-19
seq20723 104 2e-17
seq33636 98.7 1e-15
seq29861 98.7 1e-15
seq19842 98.7 1e-15
seq4181 98.7 1e-15
seq18571 95.1 1e-14
seq28651 86.0 6e-12
>seq25885
Length=2931
Score = 111 bits (122), Expect = 2e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | ||||||||||| ||||| | || || ||| | |
Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| ||| | || | | |||| || |||| ||||| ||||| |||| | || |
Sbjct 934 GACACTGTGGACAATG--TGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATC 877
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || ||||| || | ||| ||||||||||| || |||| || || | ||||||||
Sbjct 876 AGCAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACA 817
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||| || ||||| | ||||| || ||||| || ||| | | |||||
Sbjct 816 ACATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGG 768
>seq20723
Length=574
Score = 104 bits (114), Expect = 2e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
||||| ||||| ||||| ||||| || || ||||||||| | || |||||||| | ||||
Sbjct 232 CAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGAGGCGAGCGAC 291
Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366
| | | | | |||| || |||| ||||| ||||||||||| | |||||||||
Sbjct 292 CCCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGAATTCCGCCGGACCAACAG 351
Query 38367 CGGCTCATTTACGCGGG 38383
|| ||||||| ||||||
Sbjct 352 CGCCTCATTTTCGCGGG 368
>seq33636
Length=8621
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/142 (77%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || |||||||| || |||||||||||| |||| |||||||| | |
Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| | | | |||| | |||| || |||| ||||| ||||| | ||||||| ||||
Sbjct 4978 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCA-TCCCGCCGGACC 5035
Query 38362 AACAGCGGCTCATTTACGCGGG 38383
| ||||| || || | ||| ||
Sbjct 5036 AGCAGCGCCTTATCTTCGCTGG 5057
>seq29861
Length=4039
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
||||| ||||| ||||| ||||| || || ||||||||| | || |||||||| | ||||
Sbjct 3982 CAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGAGGCGAGCGAC 3923
Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366
| | | | | |||| || |||| ||||| ||||||||||| | |||||||||
Sbjct 3922 CCCATCGAGAATGTGAAAGCGAAGATCCATGACAAGGAGGGAATTCCGCCGGACCAACAG 3863
Query 38367 CGGCTCATTTACGCGGG 38383
|| |||||| ||||||
Sbjct 3862 CGCATCATTTTCGCGGG 3846
>seq19842
Length=1839
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
||||| ||||| ||||| ||||| || || ||||||||| | || |||||||| | ||||
Sbjct 1629 CAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGAGGCGAGCGAC 1570
Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366
| | | | | |||| || |||| | ||| ||||||||||| | |||||||||
Sbjct 1569 CCCATCGAGAATGTGAAAGCGAAGATCCAGGGCAAGGAGGGAATTCCGCCGGACCAACAG 1510
Query 38367 CGGCTCATTTACGCGGG 38383
|| ||||||| ||||||
Sbjct 1509 CGCCTCATTTTCGCGGG 1493
>seq4181
Length=1006
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/142 (77%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || |||||||| || |||||||||||| |||| |||||||| | |
Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| | | | |||| | |||| || |||| ||||| ||||| | ||||||| ||||
Sbjct 804 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCA-TCCCGCCGGACC 861
Query 38362 AACAGCGGCTCATTTACGCGGG 38383
| ||||| || || | ||| ||
Sbjct 862 AGCAGCGCCTTATCTTCGCTGG 883
>seq18571
Length=770
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
||||| ||||| ||||| ||||| || || ||||||||| | || |||||||| | |||
Sbjct 440 CAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGAGGCGAGTGAC 499
Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366
| | | | | | |||| || |||| ||||| |||||||||| | |||||||||
Sbjct 500 ACCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGCAGGGAATTCCGCCGGACCAACAG 559
Query 38367 CGGCTCATTTACGCGGG 38383
|| ||||||| ||| ||
Sbjct 560 CGCCTCATTTTCGCTGG 576
>seq28651
Length=4159
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| || || || || ||||| ||||| || |||||| |||| || ||||| |
Sbjct 1150 AATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1209
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||||| | | | | | || | || |||| ||||| ||||| || || | |||||
Sbjct 1210 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1269
Query 38363 ACAGCGGCTCATTTACGCGGGCAAA 38387
|||||| ||||| | ||| || |||
Sbjct 1270 ACAGCGTCTCATCTTCGCTGGTAAA 1294
Score = 82.4 bits (90), Expect = 8e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || ||||| ||||| || |||||| |||| || ||||| |
Sbjct 1424 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1483
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||||| | | | | | || | || |||| ||||| ||||| || || | |||||
Sbjct 1484 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1543
Query 38363 ACAGCGGCTCATTTACGCGGGCAAA 38387
|||||| ||||| | ||| || |||
Sbjct 1544 ACAGCGTCTCATCTTCGCTGGTAAA 1568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499955800030720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |