Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq25885 111 2e-19 seq20723 104 2e-17 seq33636 98.7 1e-15 seq29861 98.7 1e-15 seq19842 98.7 1e-15 seq4181 98.7 1e-15 seq18571 95.1 1e-14 seq28651 86.0 6e-12 >seq25885 Length=2931 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | ||||||||||| ||||| | || || ||| | | Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| ||| | || | | |||| || |||| ||||| ||||| |||| | || | Sbjct 934 GACACTGTGGACAATG--TGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATC 877 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || ||||| || | ||| ||||||||||| || |||| || || | |||||||| Sbjct 876 AGCAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACA 817 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || ||||| | ||||| || ||||| || ||| | | ||||| Sbjct 816 ACATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGG 768 >seq20723 Length=574 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 ||||| ||||| ||||| ||||| || || ||||||||| | || |||||||| | |||| Sbjct 232 CAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGAGGCGAGCGAC 291 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | | | | |||| || |||| ||||| ||||||||||| | ||||||||| Sbjct 292 CCCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGAATTCCGCCGGACCAACAG 351 Query 38367 CGGCTCATTTACGCGGG 38383 || ||||||| |||||| Sbjct 352 CGCCTCATTTTCGCGGG 368 >seq33636 Length=8621 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || |||||||||||| |||| |||||||| | | Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | |||| || |||| ||||| ||||| | ||||||| |||| Sbjct 4978 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCA-TCCCGCCGGACC 5035 Query 38362 AACAGCGGCTCATTTACGCGGG 38383 | ||||| || || | ||| || Sbjct 5036 AGCAGCGCCTTATCTTCGCTGG 5057 >seq29861 Length=4039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 ||||| ||||| ||||| ||||| || || ||||||||| | || |||||||| | |||| Sbjct 3982 CAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGAGGCGAGCGAC 3923 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | | | | |||| || |||| ||||| ||||||||||| | ||||||||| Sbjct 3922 CCCATCGAGAATGTGAAAGCGAAGATCCATGACAAGGAGGGAATTCCGCCGGACCAACAG 3863 Query 38367 CGGCTCATTTACGCGGG 38383 || |||||| |||||| Sbjct 3862 CGCATCATTTTCGCGGG 3846 >seq19842 Length=1839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 ||||| ||||| ||||| ||||| || || ||||||||| | || |||||||| | |||| Sbjct 1629 CAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGAGGCGAGCGAC 1570 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | | | | |||| || |||| | ||| ||||||||||| | ||||||||| Sbjct 1569 CCCATCGAGAATGTGAAAGCGAAGATCCAGGGCAAGGAGGGAATTCCGCCGGACCAACAG 1510 Query 38367 CGGCTCATTTACGCGGG 38383 || ||||||| |||||| Sbjct 1509 CGCCTCATTTTCGCGGG 1493 >seq4181 Length=1006 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || |||||||||||| |||| |||||||| | | Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | |||| || |||| ||||| ||||| | ||||||| |||| Sbjct 804 GACACCATCGAGAACG-TGAAAGCGAAGATCCAGGACAAGGAGGGCA-TCCCGCCGGACC 861 Query 38362 AACAGCGGCTCATTTACGCGGG 38383 | ||||| || || | ||| || Sbjct 862 AGCAGCGCCTTATCTTCGCTGG 883 >seq18571 Length=770 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 ||||| ||||| ||||| ||||| || || ||||||||| | || |||||||| | ||| Sbjct 440 CAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGAGGCGAGTGAC 499 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | | | | | |||| || |||| ||||| |||||||||| | ||||||||| Sbjct 500 ACCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGCAGGGAATTCCGCCGGACCAACAG 559 Query 38367 CGGCTCATTTACGCGGG 38383 || ||||||| ||| || Sbjct 560 CGCCTCATTTTCGCTGG 576 >seq28651 Length=4159 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || ||||| ||||| || |||||| |||| || ||||| | Sbjct 1150 AATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1209 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | || |||| ||||| ||||| || || | ||||| Sbjct 1210 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1269 Query 38363 ACAGCGGCTCATTTACGCGGGCAAA 38387 |||||| ||||| | ||| || ||| Sbjct 1270 ACAGCGTCTCATCTTCGCTGGTAAA 1294 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| ||||| || |||||| |||| || ||||| | Sbjct 1424 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1483 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | || |||| ||||| ||||| || || | ||||| Sbjct 1484 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1543 Query 38363 ACAGCGGCTCATTTACGCGGGCAAA 38387 |||||| ||||| | ||| || ||| Sbjct 1544 ACAGCGTCTCATCTTCGCTGGTAAA 1568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499955800030720