Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq31391 98.7 1e-15 seq34234 82.4 9e-11 seq33211 82.4 9e-11 >seq31391 Length=5529 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 9357 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 9416 |||| | ||| || || ||||| || |||||||| | ||| |||||| |||| || Sbjct 3521 CGTTTCCGTCCAACAGCGTCAATTTCGTCAATGAACAGAATGCATGGTGCCTTTTTCCGC 3462 Query 9417 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAG 9476 || |||||||| | || ||||| | | | || ||||| || |||||||||| ||| Sbjct 3461 GCCATTTCAAACATGTCCCGAACTCGGCTAGGCCCAACACCGACGAACATCTCCAAAAAC 3402 Query 9477 TTTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9535 | | |||| ||| || || || || ||||| | ||| || ||| | ||| |||||| Sbjct 3401 TCGGAACCGGACACAGTG-ATAAATGGCACATTTGCTTCGCCAGCAGTTGCTTTGGCGAG 3343 Query 9536 AAGAGTCTTACCCGTACCTGG 9556 |||||| ||||| || || || Sbjct 3342 AAGAGTTTTACCAGTGCCCGG 3322 >seq34234 Length=14289 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || ||| ||||||||| |||||| ||||||||||||||| |||||| ||||| ||||| Sbjct 3213 TCCTATGGTGTAGTGGCTATCACTCTGGACTTTGAATCCAGCAACCCCGGTTCGAATCCG 3272 Query 136226 GGTAGGAGCT 136235 ||||||| || Sbjct 3273 GGTAGGACCT 3282 >seq33211 Length=8586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 136171 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 136230 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 1138 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 1197 Query 136231 GAGCT 136235 || || Sbjct 1198 GACCT 1202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589724836829920