Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq31391 98.7 1e-15
seq34234 82.4 9e-11
seq33211 82.4 9e-11
>seq31391
Length=5529
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 9357 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 9416
|||| | ||| || || ||||| || |||||||| | ||| |||||| |||| ||
Sbjct 3521 CGTTTCCGTCCAACAGCGTCAATTTCGTCAATGAACAGAATGCATGGTGCCTTTTTCCGC 3462
Query 9417 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAG 9476
|| |||||||| | || ||||| | | | || ||||| || |||||||||| |||
Sbjct 3461 GCCATTTCAAACATGTCCCGAACTCGGCTAGGCCCAACACCGACGAACATCTCCAAAAAC 3402
Query 9477 TTTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9535
| | |||| ||| || || || || ||||| | ||| || ||| | ||| ||||||
Sbjct 3401 TCGGAACCGGACACAGTG-ATAAATGGCACATTTGCTTCGCCAGCAGTTGCTTTGGCGAG 3343
Query 9536 AAGAGTCTTACCCGTACCTGG 9556
|||||| ||||| || || ||
Sbjct 3342 AAGAGTTTTACCAGTGCCCGG 3322
>seq34234
Length=14289
Score = 82.4 bits (90), Expect = 9e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225
|| ||| ||||||||| |||||| ||||||||||||||| |||||| ||||| |||||
Sbjct 3213 TCCTATGGTGTAGTGGCTATCACTCTGGACTTTGAATCCAGCAACCCCGGTTCGAATCCG 3272
Query 136226 GGTAGGAGCT 136235
||||||| ||
Sbjct 3273 GGTAGGACCT 3282
>seq33211
Length=8586
Score = 82.4 bits (90), Expect = 9e-11
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 136171 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 136230
|||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct 1138 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 1197
Query 136231 GAGCT 136235
|| ||
Sbjct 1198 GACCT 1202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589724836829920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |