Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq26788 89.7 1e-12
seq10457 86.0 1e-11
>seq26788
Length=2620
Score = 89.7 bits (98), Expect = 1e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| ||||||||||| || || ||||| || || ||||| || ||||| || || ||
Sbjct 1966 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 1907
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| |||||||| |||||||| || || |||||||| | ||||| || || |
Sbjct 1906 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 1847
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
|||||| ||||| | ||||||
Sbjct 1846 GAGTTTTGACGAAGATTTGCAT 1825
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| ||||||||||| || || |||||||| |||||||| || ||||| || || ||
Sbjct 2250 TACCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCG 2191
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| |||||||| |||||||| || || |||||||| | ||||| || || |
Sbjct 2190 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 2131
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
|| || ||||| | |||||
Sbjct 2130 GCGTCTTGACGAAGATCTGCAT 2109
>seq10457
Length=1107
Score = 86.0 bits (94), Expect = 1e-11
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| | ||||| ||| || || | | ||| || || | |||| || || |||
Sbjct 709 ACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCCAACGTTCGGCCGTCCTCG 650
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || || | | ||| || || || | |||||||| || |||||
Sbjct 649 AGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCCTCCTTGTCAGTG 590
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||| || ||||| | ||||| || ||||| || || || | | ||||
Sbjct 589 ATCTTCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACCTCCAGCGTGAT-GACTTT 531
Query 195112 -CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| ||||||||||| | ||| | |||||||
Sbjct 530 GCCGGTCAAAGTTTTGATGAAAATTTGCATT 500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108988217693036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |