Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq26788 89.7 1e-12 seq10457 86.0 1e-11 >seq26788 Length=2620 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| ||||||||||| || || ||||| || || ||||| || ||||| || || || Sbjct 1966 TACCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCG 1907 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || |||||||| |||||||| || || |||||||| | ||||| || || | Sbjct 1906 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 1847 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | |||||| Sbjct 1846 GAGTTTTGACGAAGATTTGCAT 1825 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| ||||||||||| || || |||||||| |||||||| || ||||| || || || Sbjct 2250 TACCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCG 2191 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || |||||||| |||||||| || || |||||||| | ||||| || || | Sbjct 2190 CTTTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGA 2131 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 2130 GCGTCTTGACGAAGATCTGCAT 2109 >seq10457 Length=1107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| | ||||| ||| || || | | ||| || || | |||| || || ||| Sbjct 709 ACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCCAACGTTCGGCCGTCCTCG 650 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || || | | ||| || || || | |||||||| || ||||| Sbjct 649 AGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCCTCCTTGTCAGTG 590 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||| || ||||| | ||||| || ||||| || || || | | |||| Sbjct 589 ATCTTCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACCTCCAGCGTGAT-GACTTT 531 Query 195112 -CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||||||||| | ||| | ||||||| Sbjct 530 GCCGGTCAAAGTTTTGATGAAAATTTGCATT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108988217693036