Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq33636 82.4 5e-11 seq4181 82.4 5e-11 >seq33636 Length=8621 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 || || || || || || |||||||| |||| | ||||||||||| |||||| | Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 || ||| | || | || | ||||| || |||| ||| |||||||| || ||||| Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938 Query 34962 GTCTTCACAAAGATCTGCAT 34981 ||||| || ||||||||||| Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918 >seq4181 Length=1006 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 || || || || || || |||||||| |||| | ||||||||||| |||||| | Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 || ||| | || | || | ||||| || |||| ||| |||||||| || ||||| Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764 Query 34962 GTCTTCACAAAGATCTGCAT 34981 ||||| || ||||||||||| Sbjct 763 GTCTTGACGAAGATCTGCAT 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324496278769824