Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq33636 82.4 5e-11
seq4181 82.4 5e-11
>seq33636
Length=8621
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| || || || || || |||||||| |||| | ||||||||||| |||||| |
Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998
Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961
|| ||| | || | || | ||||| || |||| ||| |||||||| || |||||
Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938
Query 34962 GTCTTCACAAAGATCTGCAT 34981
||||| || |||||||||||
Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918
>seq4181
Length=1006
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| || || || || || |||||||| |||| | ||||||||||| |||||| |
Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824
Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961
|| ||| | || | || | ||||| || |||| ||| |||||||| || |||||
Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764
Query 34962 GTCTTCACAAAGATCTGCAT 34981
||||| || |||||||||||
Sbjct 763 GTCTTGACGAAGATCTGCAT 744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324496278769824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |