Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3368 91.5 1e-12 seq33500 86.0 5e-11 >seq3368 Length=1335 Score = 91.5 bits (100), Expect = 1e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || |||||||||||||| || || || || ||||| ||||| ||||| || ||||||| | Sbjct 713 GGCATTCCTCCTGCTCCCCGAGGCGTTCCTCAAATCGAAGTCACTTTTGAGATCGATGTC 772 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 |||||||||||| | |||||||| Sbjct 773 AATGGAATTTTGCACGTGACTGC 795 >seq33500 Length=11382 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504 || || |||||||||||| ||||||||||| |||||||||| | || |||||||| Sbjct 6337 GCAACGAAAGATGCTGGAAAAATTGCTGGACTGCATGTTCTTCGCGTGATAAATGAACCG 6278 Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| ||||| | || ||||| |||||||| Sbjct 6277 ACTGCAGCTGCCTTGGCTTATGGTCTTGATAA 6246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027460484426920