Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_016165.1
Length=39283
Score E
Sequences producing significant alignments: (Bits) Value
seq5635 179 9e-41
>seq5635
Length=1580
Score = 179 bits (198), Expect = 9e-41
Identities = 338/488 (69%), Gaps = 8/488 (2%)
Strand=Plus/Minus
Query 20425 TCAAGGCCTTCGCGGACGAGTTCGACCGTCTCGTCGAAAAATACGGCTGGTCCTACAACG 20484
||||| | | ||| |||| |||||||| ||||| |||||||||||| | ||||| |
Sbjct 1539 TCAAGACTTCCGCA-ACGACTTCGACCGGATCGTCTCGAAATACGGCTGGACGTACAAGG 1481
Query 20485 GCGGGCGCGAATGGCGCATCCGCACCATTTTCGAGACGAACATCCGCACGAGCTACATGG 20544
||| || |||||||| |||| ||||||||| || ||||| |||||| ||| ||||
Sbjct 1480 GCGATTACGGATGGCGCACCCGCGTCATTTTCGAAACCAACATGCGCACGGCCTATATGG 1421
Query 20545 CCGGGAGGTTGCGGCAGATGCGCGATCCGGATGTGGTCAAGGTGCGGCCCTATTGGCAAT 20604
| || | | ||||||||||| ||||| ||| ||||| ||||||| | ||| | |
Sbjct 1420 CGGGCCGCCTCAAACAGATGCGCGACCCGGACGTGCTCAAGCTGCGGCCGTTCTGGGAGT 1361
Query 20605 ACCGCCACGGAGAAACCCGGGTGCCGCTGAACCCGCGGCCGGAGCACACCTCCTGGCACA 20664
|||| ||||| |||||||| |||| | ||| ||||| || | | |||
Sbjct 1360 ACCGGCACGGCGAAACCCGCAAGCCGAAAATCCCCCGGCCATCCCATGAGGCTTTGCATG 1301
Query 20665 ACCTG-GTGCTGTTCTGGAACGATCCGTGGTGGGATGCGCATTTCCCGCCGAACGATTGG 20723
| | | | || | | ||||| |||||||| ||| || ||||||||||| |||
Sbjct 1300 GCAGGATTTATCGTCATG-ATGATCCATGGTGGGAAAAGCACTTTCCGCCGAACGACTGG 1242
Query 20724 GTCTGCAGCTGCGGTGTGCGGACGCTCTCGCGCGGTGATCTGCGGCGCATGGGCAAGGAC 20783
||| |||||| || || ||||||||| | |||||| |||| ||||| |||
Sbjct 1241 TATTGCTCCTGCGGCGTCCGCTCGCTCTCGCTGCGCGATCTGAAGCGCCGGGGCATGGAT 1182
Query 20784 GGGCCGGACAAGGCACCTG-AGA-CTTCGATGGTCAAGCACATCGACAGGGCCACTGGTG 20841
|| |||||| | || || | || ||| ||| | | ||||| || | ||
Sbjct 1181 GGTCCGGACGAAGCGCCCGCCGATCTT--ATGATGCCGATGATCGATCCGGTTTCCGGCA 1124
Query 20842 CGGTGATCGAGCTTCCCGAGGGGATCGGCTACGG-CTGGGATTACATGCCGGGCGATCTG 20900
||||||| | || |||| ||||| || || |||||||| |||||||||||| |
Sbjct 1123 GTCTGATCGAACAGCCGCAGGGTATCGGTTATGGTATGGGATTATATGCCGGGCGATGTT 1064
Query 20901 TGGGAGCG 20908
||||||||
Sbjct 1063 TGGGAGCG 1056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 125532239612520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |