Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_016165.1 Length=39283 Score E Sequences producing significant alignments: (Bits) Value seq5635 179 9e-41 >seq5635 Length=1580 Score = 179 bits (198), Expect = 9e-41 Identities = 338/488 (69%), Gaps = 8/488 (2%) Strand=Plus/Minus Query 20425 TCAAGGCCTTCGCGGACGAGTTCGACCGTCTCGTCGAAAAATACGGCTGGTCCTACAACG 20484 ||||| | | ||| |||| |||||||| ||||| |||||||||||| | ||||| | Sbjct 1539 TCAAGACTTCCGCA-ACGACTTCGACCGGATCGTCTCGAAATACGGCTGGACGTACAAGG 1481 Query 20485 GCGGGCGCGAATGGCGCATCCGCACCATTTTCGAGACGAACATCCGCACGAGCTACATGG 20544 ||| || |||||||| |||| ||||||||| || ||||| |||||| ||| |||| Sbjct 1480 GCGATTACGGATGGCGCACCCGCGTCATTTTCGAAACCAACATGCGCACGGCCTATATGG 1421 Query 20545 CCGGGAGGTTGCGGCAGATGCGCGATCCGGATGTGGTCAAGGTGCGGCCCTATTGGCAAT 20604 | || | | ||||||||||| ||||| ||| ||||| ||||||| | ||| | | Sbjct 1420 CGGGCCGCCTCAAACAGATGCGCGACCCGGACGTGCTCAAGCTGCGGCCGTTCTGGGAGT 1361 Query 20605 ACCGCCACGGAGAAACCCGGGTGCCGCTGAACCCGCGGCCGGAGCACACCTCCTGGCACA 20664 |||| ||||| |||||||| |||| | ||| ||||| || | | ||| Sbjct 1360 ACCGGCACGGCGAAACCCGCAAGCCGAAAATCCCCCGGCCATCCCATGAGGCTTTGCATG 1301 Query 20665 ACCTG-GTGCTGTTCTGGAACGATCCGTGGTGGGATGCGCATTTCCCGCCGAACGATTGG 20723 | | | | || | | ||||| |||||||| ||| || ||||||||||| ||| Sbjct 1300 GCAGGATTTATCGTCATG-ATGATCCATGGTGGGAAAAGCACTTTCCGCCGAACGACTGG 1242 Query 20724 GTCTGCAGCTGCGGTGTGCGGACGCTCTCGCGCGGTGATCTGCGGCGCATGGGCAAGGAC 20783 ||| |||||| || || ||||||||| | |||||| |||| ||||| ||| Sbjct 1241 TATTGCTCCTGCGGCGTCCGCTCGCTCTCGCTGCGCGATCTGAAGCGCCGGGGCATGGAT 1182 Query 20784 GGGCCGGACAAGGCACCTG-AGA-CTTCGATGGTCAAGCACATCGACAGGGCCACTGGTG 20841 || |||||| | || || | || ||| ||| | | ||||| || | || Sbjct 1181 GGTCCGGACGAAGCGCCCGCCGATCTT--ATGATGCCGATGATCGATCCGGTTTCCGGCA 1124 Query 20842 CGGTGATCGAGCTTCCCGAGGGGATCGGCTACGG-CTGGGATTACATGCCGGGCGATCTG 20900 ||||||| | || |||| ||||| || || |||||||| |||||||||||| | Sbjct 1123 GTCTGATCGAACAGCCGCAGGGTATCGGTTATGGTATGGGATTATATGCCGGGCGATGTT 1064 Query 20901 TGGGAGCG 20908 |||||||| Sbjct 1063 TGGGAGCG 1056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125532239612520