Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 125 5e-24
seq10457 105 5e-18
>seq25885
Length=2931
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||||| || || | ||||| || |||||| ||| || || || ||||| || |
Sbjct 768 CCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCC 827
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| |||| |||| || | ||| || ||||| || ||||| || || ||||||| |||
Sbjct 828 AACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGA 887
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
|||||||||||||| ||||| || ||| |||||| || || |||||||
Sbjct 888 ACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACC 947
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| || |||||||| |||||||| || || || ||||| |||||
Sbjct 948 TCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq10457
Length=1107
Score = 105 bits (116), Expect = 5e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||||| ||| |||| ||| | |||| ||| ||| || || | | ||| ||||
Sbjct 729 CGCCGCCCCGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAG 670
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| |||| |||| || | ||| || |||||||| | || |||||| ||||| | ||
Sbjct 669 CCAACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGG 610
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCC 48716
||| |||||||||||| | ||||| | || ||| | ||| || | || |||
Sbjct 609 GAATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTC-CATGCTGTCC 551
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||||| ||| || ||| || ||||||||||| | ||||| |||||
Sbjct 550 ACCTCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCAT 501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380776461966684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |