Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq25885 125 5e-24 seq10457 105 5e-18 >seq25885 Length=2931 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||||| || || | ||||| || |||||| ||| || || || ||||| || | Sbjct 768 CCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCC 827 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | |||| |||| || | ||| || ||||| || ||||| || || ||||||| ||| Sbjct 828 AACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGA 887 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 |||||||||||||| ||||| || ||| |||||| || || ||||||| Sbjct 888 ACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACC 947 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || |||||||| |||||||| || || || ||||| ||||| Sbjct 948 TCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq10457 Length=1107 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||||| ||| |||| ||| | |||| ||| ||| || || | | ||| |||| Sbjct 729 CGCCGCCCCGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAG 670 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | |||| |||| || | ||| || |||||||| | || |||||| ||||| | || Sbjct 669 CCAACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGG 610 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCC 48716 ||| |||||||||||| | ||||| | || ||| | ||| || | || ||| Sbjct 609 GAATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTC-CATGCTGTCC 551 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| ||| || ||| || ||||||||||| | ||||| ||||| Sbjct 550 ACCTCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCAT 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380776461966684