Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq18571 91.5 1e-12
seq5446 89.7 3e-12
>seq18571
Length=770
Score = 91.5 bits (100), Expect = 1e-12
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||| ||||| || || ||||| || || |||||||| | |||||| || ||||| |
Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517
Query 480693 TTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || || ||| | | | | || ||||||| || || || ||||||||
Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTT-CAAGGGTGATGGTCTTCCCGGTGAG 458
Query 480752 AGTCTTAACGAAAATTTGGAAC 480773
||| || |||||||||||||||
Sbjct 457 AGTTTTGACGAAAATTTGGAAC 436
>seq5446
Length=1180
Score = 89.7 bits (98), Expect = 3e-12
Identities = 184/270 (68%), Gaps = 8/270 (3%)
Strand=Plus/Plus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
||||||||||| | || || || ||| ||||| | || | |||| || | |||
Sbjct 708 ATTGGTATTGACCTTGGCACCACCTACTCCTGTGTTGGCGTCTACAAAAACGGCAGAGTG 767
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC-TGA 474450
|| ||||| ||||||||||| || || ||| ||| || || || || |||| || |
Sbjct 768 GAGATAATCGCCAATGACCAGGGAAACCGAATAACGCCTTCCTACGTGGCTTTCACACCA 827
Query 474451 AACT-----GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AATCCTGT 474504
||| || | ||| || ||||||||||| ||| | | || || ||| || || |
Sbjct 828 GACTCGGGCGAGCGTCTGATCGGAGATGCTGC-AAAAAACCAGTTGACTCTAAACCCGGA 886
Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564
|| || ||||| ||||| ||| || | ||||| || | || || | || |||||
Sbjct 887 AAACACCATTTTCGATGCCAAACGACTCATTGGACGGGAATTCACCGACAAAACCGTCCA 946
Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGT 474594
|||||| | |||||||||||||||
Sbjct 947 GGACGATATGAAACTTTGGCCTTTTAAGGT 976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266690405476784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |