Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq18571 91.5 1e-12 seq5446 89.7 3e-12 >seq18571 Length=770 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||| ||||| || || ||||| || || |||||||| | |||||| || ||||| | Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517 Query 480693 TTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || || ||| | | | | || ||||||| || || || |||||||| Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTT-CAAGGGTGATGGTCTTCCCGGTGAG 458 Query 480752 AGTCTTAACGAAAATTTGGAAC 480773 ||| || ||||||||||||||| Sbjct 457 AGTTTTGACGAAAATTTGGAAC 436 >seq5446 Length=1180 Score = 89.7 bits (98), Expect = 3e-12 Identities = 184/270 (68%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||||||||| | || || || ||| ||||| | || | |||| || | ||| Sbjct 708 ATTGGTATTGACCTTGGCACCACCTACTCCTGTGTTGGCGTCTACAAAAACGGCAGAGTG 767 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC-TGA 474450 || ||||| ||||||||||| || || ||| ||| || || || || |||| || | Sbjct 768 GAGATAATCGCCAATGACCAGGGAAACCGAATAACGCCTTCCTACGTGGCTTTCACACCA 827 Query 474451 AACT-----GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT-AATCCTGT 474504 ||| || | ||| || ||||||||||| ||| | | || || ||| || || | Sbjct 828 GACTCGGGCGAGCGTCTGATCGGAGATGCTGC-AAAAAACCAGTTGACTCTAAACCCGGA 886 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || || ||||| ||||| ||| || | ||||| || | || || | || ||||| Sbjct 887 AAACACCATTTTCGATGCCAAACGACTCATTGGACGGGAATTCACCGACAAAACCGTCCA 946 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGT 474594 |||||| | ||||||||||||||| Sbjct 947 GGACGATATGAAACTTTGGCCTTTTAAGGT 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266690405476784