Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq29577 141 1e-28 seq25885 131 2e-25 seq28651 116 5e-21 seq26788 116 5e-21 seq33636 113 6e-20 seq4181 113 6e-20 seq31391 102 1e-16 seq33016 93.3 6e-14 >seq29577 Length=2284 Score = 141 bits (156), Expect = 1e-28 Identities = 241/347 (69%), Gaps = 2/347 (1%) Strand=Plus/Plus Query 195642 TTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTG 195701 ||||||| |||||| | || |||||||||||||| || || | ||| | || | |||| Sbjct 693 TTTCGTCCATGGTGCTTATCAAGATGAAGGAGACGGCCGAGGCCTTCCTTGGCCAGACTG 752 Query 195702 TGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAA 195761 | | ||||| || || || || || |||||||||| || || || || ||||| || | Sbjct 753 TCACGGATGCGGTGGTCACAGTGCCCGCTTACTTCAACGACTCGCAGCGTCAGGCCACCA 812 Query 195762 AGGACGCTGCTGCTATTGCGGGTCTAAAC-TGTCTTAGAATTATCAATGAACCAACAGCG 195820 ||||||| | | || || || || ||| ||| | | || ||||| || || ||||| Sbjct 813 AGGACGCGGGGACCATCGCCGGGCTGAACGTGT-TGCGCATCATCAACGAGCCGACAGCC 871 Query 195821 GCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTT 195880 || || ||||| || || |||||||||| | | | || |||| | || || Sbjct 872 GCCGCGATTGCCTACGGCTTGGACAAGAAGGGGCAGGGTGAGCGCCATGTGCTCATTTTC 931 Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940 || | || ||||| || || || || || | || | || || | || || ||||| Sbjct 932 GACTTGGGCGGTGGCACTTTCGACGTGTCCATCCTTACCATCGAGGACGGCATCTTCGAG 991 Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || | || || ||||| |||||||| ||||| || || ||||| Sbjct 992 GTGAAATCGACCGCCGGTGACACTCATCTCGGTGGCGAGGACTTCGA 1038 Score = 98.7 bits (108), Expect = 1e-15 Identities = 181/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 196597 TGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG 196656 |||||| || | || || ||||| || ||| | | ||||| ||| | || || || Sbjct 2023 TGTTCAATTTGAGGTCTACGAAGGCGAGCGCGCGATGACCAAGGACAACAACCTGCTGGG 2082 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716 | ||||| | | || ||||| | || || |||| || || || || | || Sbjct 2083 CAAGTTCGAGCTCAGCGGCATTCCGCCGGCGCCACGAGGAGTGCCTCAAATCGAAGTCAC 2142 Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 ||||| || ||||| || || ||| | ||||| | || |||||||| || | || || Sbjct 2143 TTTCGACATCGACGCCAACGGCATTTTGAACGTGTCGGCCCAGGACAAGTCTACCGGGAA 2202 Query 196777 ATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAAC 196835 | | ||| ||||| || ||||| ||||| || || |||| |||||||||||||| | Sbjct 2203 A-CAGAACAAGATCACCATCACCAACGACAAAGGCCGCCTTTACAAGGAGGAAATTGAGC 2261 Query 196836 GTATGGTTCAAGATGCGGAAAAG 196858 | ||||| || || ||||| ||| Sbjct 2262 GCATGGTGCAGGAGGCGGAGAAG 2284 Score = 93.3 bits (102), Expect = 6e-14 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 || ||||| || | || ||||| || |||||||| || | || || || || || || Sbjct 1408 GAAATTGACTCTCTCTTCGACGGCATCGACTTCTACACCAACATCACGCGCGCCCGCTTC 1467 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || ||| | | | || | || | || ||||| ||||| || | | | || Sbjct 1468 GAGGAGCTTTGCGCCGACCTTTTCCGCAACACCATGGACCCTGTGGAGAAGGCTTTGCGC 1527 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||||| |||||||| ||||| || | | || ||||| | || || || || || || Sbjct 1528 GACGCGAAGATGGACAAGTCCCAGATCCACGACATTGTGTTGGTCGGCGGCTCGACTCGA 1587 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 ||||||||| | || || | || || ||| ||| || || | ||||||| Sbjct 1588 ATTCCGAAGGTGCAGAAGCTTCTCTCCGACTTTTTCTCCGGCAAGGAGCTGAACAAAAGC 1647 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431 ||||||||||| || || || || || || ||||| || ||||| || ||||| || || Sbjct 1648 ATCAACCCGGACGAGGCGGTGGCCTACGGAGCGGCTGTCCAGGCGGCCATTCTTTCCGG 1706 >seq25885 Length=2931 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || ||||| || | || || ||||| ||||| | ||||| ||| || Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| | || || | || | ||||| ||||| ||||| ||| |||| || |||||| Sbjct 934 GACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAG 875 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| || || || || || |||||||| || || ||||| || | || || |||||| Sbjct 874 CAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAAC 815 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || ||| | || || | || ||||| || Sbjct 814 ATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGG 768 >seq28651 Length=4159 Score = 116 bits (128), Expect = 5e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || ||||| || || || || ||||||||||| |||||| || Sbjct 1151 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC 1210 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || ||||| ||||| ||||| || || Sbjct 1211 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1270 Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005 || || || || || ||||||||| Sbjct 1271 CAGCGTCTCATCTTCGCTGGTAAA 1294 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || || || || || ||||||||||| |||||| || Sbjct 1425 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC 1484 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || ||||| ||||| ||||| || || Sbjct 1485 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1544 Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005 || || || || || ||||||||| Sbjct 1545 CAGCGTCTCATCTTCGCTGGTAAA 1568 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || || || || || ||||| ||||| |||||| || Sbjct 1699 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAGC 1758 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || ||||| ||||| ||||| || || Sbjct 1759 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1818 Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005 || || || || || ||||||||| Sbjct 1819 CAGCGTCTCATCTTCGCTGGTAAA 1842 >seq26788 Length=2620 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || ||||| || || || || || |||||||| ||||| ||| || Sbjct 1825 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 1884 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || ||| Sbjct 1885 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1944 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || ||||| || ||||||| Sbjct 1945 CAGCGCCTTATCTTCGCTGGTA 1966 >seq33636 Length=8621 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || ||||| || || || || || |||||||| ||||| ||| || Sbjct 4632 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 4691 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || ||| Sbjct 4692 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 4751 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || || || ||||||| Sbjct 4752 CAGCGCCTCATCTTCGCTGGTA 4773 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || ||||| ||||||||||| || ||| || Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || ||| Sbjct 4978 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5037 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || ||||| || ||||||| Sbjct 5038 CAGCGCCTTATCTTCGCTGGTA 5059 >seq4181 Length=1006 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || ||||| || || || || || |||||||| ||||| ||| || Sbjct 458 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 517 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || ||| Sbjct 518 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 577 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || || || ||||||| Sbjct 578 CAGCGCCTCATCTTCGCTGGTA 599 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || ||||| ||||||||||| || ||| || Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || ||| Sbjct 804 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 863 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || ||||| || ||||||| Sbjct 864 CAGCGCCTTATCTTCGCTGGTA 885 >seq31391 Length=5529 Score = 102 bits (112), Expect = 1e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 198558 GGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCG 198617 ||||||||||| | || | ||||| ||||||||||| ||||| || || | || Sbjct 3301 GGTGCTCTTCTGACTGGCCCTCCGGGCACTGGTAAAACTCTTCTCGCCAAAGCAACTGCT 3360 Query 198618 GGTGAATCGAGTGTCCCCTTTCTT-CAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGT 198676 || ||| | | ||| || ||| | | ||| | | ||||||| | ||||||||||| Sbjct 3361 GGCGAAGCAAATGTGCCATTTATCACTGTGTCCGGTTCCGAGTTTT-TGGAGATGTTCGT 3419 Query 198677 TGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATG 198736 |||||||| ||| || || ||||| | ||||| || || |||| |||||| Sbjct 3420 CGGTGTTGGGCCTAGCCGAGTTCGGGACATGTTTGAAATGGCGCGGAAAAAGGCACCATG 3479 Query 198737 TATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGAA 198786 || | |||||||| || |||||||||||||| ||| || || |||| Sbjct 3480 CATTCTGTTCATTGACGAAATTGACGCTGTTGGACGGAAACGGGGCGGAA 3529 >seq33016 Length=8042 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195631 TCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCAT 195690 ||| ||||||||||| || |||||||||| || |||||| |||| || || | | ||| Sbjct 488 TCCTGAAGAAATTTCTTCAATGGTGTTGACCAAAATGAAGCAGACGGCCGAGGCGTACAT 547 Query 195691 GGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACG 195750 ||| | || ||| || || || || || || || || || |||| ||| |||||| Sbjct 548 GGGCCACACGGTGCGCGACGCGGTGGTCACAGTGCCCGCCTATTTCAACGATGGACAACG 607 Query 195751 ACAGGCGACAAAGG 195764 |||||||||||||| Sbjct 608 ACAGGCGACAAAGG 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657576986397760