Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq29577 141 1e-28
seq25885 131 2e-25
seq28651 116 5e-21
seq26788 116 5e-21
seq33636 113 6e-20
seq4181 113 6e-20
seq31391 102 1e-16
seq33016 93.3 6e-14
>seq29577
Length=2284
Score = 141 bits (156), Expect = 1e-28
Identities = 241/347 (69%), Gaps = 2/347 (1%)
Strand=Plus/Plus
Query 195642 TTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTG 195701
||||||| |||||| | || |||||||||||||| || || | ||| | || | ||||
Sbjct 693 TTTCGTCCATGGTGCTTATCAAGATGAAGGAGACGGCCGAGGCCTTCCTTGGCCAGACTG 752
Query 195702 TGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAA 195761
| | ||||| || || || || || |||||||||| || || || || ||||| || |
Sbjct 753 TCACGGATGCGGTGGTCACAGTGCCCGCTTACTTCAACGACTCGCAGCGTCAGGCCACCA 812
Query 195762 AGGACGCTGCTGCTATTGCGGGTCTAAAC-TGTCTTAGAATTATCAATGAACCAACAGCG 195820
||||||| | | || || || || ||| ||| | | || ||||| || || |||||
Sbjct 813 AGGACGCGGGGACCATCGCCGGGCTGAACGTGT-TGCGCATCATCAACGAGCCGACAGCC 871
Query 195821 GCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTT 195880
|| || ||||| || || |||||||||| | | | || |||| | || ||
Sbjct 872 GCCGCGATTGCCTACGGCTTGGACAAGAAGGGGCAGGGTGAGCGCCATGTGCTCATTTTC 931
Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940
|| | || ||||| || || || || || | || | || || | || || |||||
Sbjct 932 GACTTGGGCGGTGGCACTTTCGACGTGTCCATCCTTACCATCGAGGACGGCATCTTCGAG 991
Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|| || | || || ||||| |||||||| ||||| || || |||||
Sbjct 992 GTGAAATCGACCGCCGGTGACACTCATCTCGGTGGCGAGGACTTCGA 1038
Score = 98.7 bits (108), Expect = 1e-15
Identities = 181/263 (69%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 196597 TGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG 196656
|||||| || | || || ||||| || ||| | | ||||| ||| | || || ||
Sbjct 2023 TGTTCAATTTGAGGTCTACGAAGGCGAGCGCGCGATGACCAAGGACAACAACCTGCTGGG 2082
Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716
| ||||| | | || ||||| | || || |||| || || || || | ||
Sbjct 2083 CAAGTTCGAGCTCAGCGGCATTCCGCCGGCGCCACGAGGAGTGCCTCAAATCGAAGTCAC 2142
Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776
||||| || ||||| || || ||| | ||||| | || |||||||| || | || ||
Sbjct 2143 TTTCGACATCGACGCCAACGGCATTTTGAACGTGTCGGCCCAGGACAAGTCTACCGGGAA 2202
Query 196777 ATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAAC 196835
| | ||| ||||| || ||||| ||||| || || |||| |||||||||||||| |
Sbjct 2203 A-CAGAACAAGATCACCATCACCAACGACAAAGGCCGCCTTTACAAGGAGGAAATTGAGC 2261
Query 196836 GTATGGTTCAAGATGCGGAAAAG 196858
| ||||| || || ||||| |||
Sbjct 2262 GCATGGTGCAGGAGGCGGAGAAG 2284
Score = 93.3 bits (102), Expect = 6e-14
Identities = 200/299 (67%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192
|| ||||| || | || ||||| || |||||||| || | || || || || || ||
Sbjct 1408 GAAATTGACTCTCTCTTCGACGGCATCGACTTCTACACCAACATCACGCGCGCCCGCTTC 1467
Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252
|| ||| | | | || | || | || ||||| ||||| || | | | ||
Sbjct 1468 GAGGAGCTTTGCGCCGACCTTTTCCGCAACACCATGGACCCTGTGGAGAAGGCTTTGCGC 1527
Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312
||||| |||||||| ||||| || | | || ||||| | || || || || || ||
Sbjct 1528 GACGCGAAGATGGACAAGTCCCAGATCCACGACATTGTGTTGGTCGGCGGCTCGACTCGA 1587
Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372
||||||||| | || || | || || ||| ||| || || | |||||||
Sbjct 1588 ATTCCGAAGGTGCAGAAGCTTCTCTCCGACTTTTTCTCCGGCAAGGAGCTGAACAAAAGC 1647
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431
||||||||||| || || || || || || ||||| || ||||| || ||||| || ||
Sbjct 1648 ATCAACCCGGACGAGGCGGTGGCCTACGGAGCGGCTGTCCAGGCGGCCATTCTTTCCGG 1706
>seq25885
Length=2931
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || ||||| || | || || ||||| ||||| | ||||| ||| ||
Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| | || || | || | ||||| ||||| ||||| ||| |||| || ||||||
Sbjct 934 GACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAG 875
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
||||| || || || || || |||||||| || || ||||| || | || || ||||||
Sbjct 874 CAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAAC 815
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
| || |||||||| || || ||| | || || | || ||||| ||
Sbjct 814 ATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGG 768
>seq28651
Length=4159
Score = 116 bits (128), Expect = 5e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||||||||| || ||||| || || || || ||||||||||| |||||| ||
Sbjct 1151 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC 1210
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || | || || ||||| || || ||||| ||||| ||||| || ||
Sbjct 1211 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1270
Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005
|| || || || || |||||||||
Sbjct 1271 CAGCGTCTCATCTTCGCTGGTAAA 1294
Score = 111 bits (122), Expect = 2e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||||||||| || || || || || || ||||||||||| |||||| ||
Sbjct 1425 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC 1484
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || | || || ||||| || || ||||| ||||| ||||| || ||
Sbjct 1485 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1544
Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005
|| || || || || |||||||||
Sbjct 1545 CAGCGTCTCATCTTCGCTGGTAAA 1568
Score = 107 bits (118), Expect = 3e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||||||||| || || || || || || ||||| ||||| |||||| ||
Sbjct 1699 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAGC 1758
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || | || || ||||| || || ||||| ||||| ||||| || ||
Sbjct 1759 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1818
Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005
|| || || || || |||||||||
Sbjct 1819 CAGCGTCTCATCTTCGCTGGTAAA 1842
>seq26788
Length=2620
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||| || ||||| || || || || || |||||||| ||||| ||| ||
Sbjct 1825 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 1884
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || |||
Sbjct 1885 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1944
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||| || |||||||
Sbjct 1945 CAGCGCCTTATCTTCGCTGGTA 1966
>seq33636
Length=8621
Score = 113 bits (124), Expect = 6e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||| || ||||| || || || || || |||||||| ||||| ||| ||
Sbjct 4632 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 4691
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || |||
Sbjct 4692 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 4751
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || || || || |||||||
Sbjct 4752 CAGCGCCTCATCTTCGCTGGTA 4773
Score = 113 bits (124), Expect = 6e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || || || || || ||||| ||||||||||| || ||| ||
Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || |||
Sbjct 4978 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5037
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||| || |||||||
Sbjct 5038 CAGCGCCTTATCTTCGCTGGTA 5059
>seq4181
Length=1006
Score = 113 bits (124), Expect = 6e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||||||||| || ||||| || || || || || |||||||| ||||| ||| ||
Sbjct 458 ATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 517
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || |||
Sbjct 518 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 577
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || || || || |||||||
Sbjct 578 CAGCGCCTCATCTTCGCTGGTA 599
Score = 113 bits (124), Expect = 6e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || || || || || ||||| ||||||||||| || ||| ||
Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | ||||| ||||| || || ||||| ||||| || || || |||
Sbjct 804 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 863
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||| || |||||||
Sbjct 864 CAGCGCCTTATCTTCGCTGGTA 885
>seq31391
Length=5529
Score = 102 bits (112), Expect = 1e-16
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 198558 GGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCG 198617
||||||||||| | || | ||||| ||||||||||| ||||| || || | ||
Sbjct 3301 GGTGCTCTTCTGACTGGCCCTCCGGGCACTGGTAAAACTCTTCTCGCCAAAGCAACTGCT 3360
Query 198618 GGTGAATCGAGTGTCCCCTTTCTT-CAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGT 198676
|| ||| | | ||| || ||| | | ||| | | ||||||| | |||||||||||
Sbjct 3361 GGCGAAGCAAATGTGCCATTTATCACTGTGTCCGGTTCCGAGTTTT-TGGAGATGTTCGT 3419
Query 198677 TGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATG 198736
|||||||| ||| || || ||||| | ||||| || || |||| ||||||
Sbjct 3420 CGGTGTTGGGCCTAGCCGAGTTCGGGACATGTTTGAAATGGCGCGGAAAAAGGCACCATG 3479
Query 198737 TATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGAA 198786
|| | |||||||| || |||||||||||||| ||| || || ||||
Sbjct 3480 CATTCTGTTCATTGACGAAATTGACGCTGTTGGACGGAAACGGGGCGGAA 3529
>seq33016
Length=8042
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 195631 TCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCAT 195690
||| ||||||||||| || |||||||||| || |||||| |||| || || | | |||
Sbjct 488 TCCTGAAGAAATTTCTTCAATGGTGTTGACCAAAATGAAGCAGACGGCCGAGGCGTACAT 547
Query 195691 GGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACG 195750
||| | || ||| || || || || || || || || || |||| ||| ||||||
Sbjct 548 GGGCCACACGGTGCGCGACGCGGTGGTCACAGTGCCCGCCTATTTCAACGATGGACAACG 607
Query 195751 ACAGGCGACAAAGG 195764
||||||||||||||
Sbjct 608 ACAGGCGACAAAGG 621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657576986397760
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