Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq34297 87.8 5e-12
seq31391 86.0 2e-11
>seq34297
Length=15098
Score = 87.8 bits (96), Expect = 5e-12
Identities = 111/152 (73%), Gaps = 3/152 (2%)
Strand=Plus/Minus
Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875
||||||| | ||||||||||| |||| || || ||| | | |||||| ||| ||
Sbjct 5370 ATTTCTTTGAGCCGGGGAACACCGAGGGTAACATT---CTTTGCAGAAACACCGGCATAG 5314
Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935
|| ||||| ||||| || | ||||| | || || || | |||||||||||| |
Sbjct 5313 TGAAAAGTGTTCAGTGTCATCTGAGTGGCCGGTTCCCCCAAACTTTGTGCCGCTAATGCG 5254
Query 301936 CCAACCATTTCTCCTGGTGCTACAATAGACTT 301967
||||||||||| |||||| | |||||| |||
Sbjct 5253 CCAACCATTTCGCCTGGTTGTGCAATAGCCTT 5222
>seq31391
Length=5529
Score = 86.0 bits (94), Expect = 2e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||||||| ||||||||||||||||| | | || || | |||| | ||| ||| ||
Sbjct 3512 CCAACAGCGTCAATTTCGTCAATGAACAGAATGCATGGTGCCTTTTTCCGCGCCATTTCA 3453
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|| | || | || ||| | |||| ||| || |||| || | ||| || ||| ||
Sbjct 3452 AACATGTCCCGAACTCGGCTAGGCCCAACACCGACGAACATCTCCAAAAACTCGGAACCG 3393
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
|| || || |||| |||||||||||||| || ||| | || ||||| || |||
Sbjct 3392 GACACAGTGATAAATGGCACATTTGCTTCGCCAGCAGTTGCTTTGGCGAGAAGAGTTTTA 3333
Query 289210 CCTGTTCCAGGTGGTCC 289226
|| || || || || ||
Sbjct 3332 CCAGTGCCCGGAGGGCC 3316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471163088232596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |