Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq34297 87.8 5e-12 seq31391 86.0 2e-11 >seq34297 Length=15098 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||||| | ||||||||||| |||| || || ||| | | |||||| ||| || Sbjct 5370 ATTTCTTTGAGCCGGGGAACACCGAGGGTAACATT---CTTTGCAGAAACACCGGCATAG 5314 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935 || ||||| ||||| || | ||||| | || || || | |||||||||||| | Sbjct 5313 TGAAAAGTGTTCAGTGTCATCTGAGTGGCCGGTTCCCCCAAACTTTGTGCCGCTAATGCG 5254 Query 301936 CCAACCATTTCTCCTGGTGCTACAATAGACTT 301967 ||||||||||| |||||| | |||||| ||| Sbjct 5253 CCAACCATTTCGCCTGGTTGTGCAATAGCCTT 5222 >seq31391 Length=5529 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||||||| ||||||||||||||||| | | || || | |||| | ||| ||| || Sbjct 3512 CCAACAGCGTCAATTTCGTCAATGAACAGAATGCATGGTGCCTTTTTCCGCGCCATTTCA 3453 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | || ||| | |||| ||| || |||| || | ||| || ||| || Sbjct 3452 AACATGTCCCGAACTCGGCTAGGCCCAACACCGACGAACATCTCCAAAAACTCGGAACCG 3393 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || || |||| |||||||||||||| || ||| | || ||||| || ||| Sbjct 3392 GACACAGTGATAAATGGCACATTTGCTTCGCCAGCAGTTGCTTTGGCGAGAAGAGTTTTA 3333 Query 289210 CCTGTTCCAGGTGGTCC 289226 || || || || || || Sbjct 3332 CCAGTGCCCGGAGGGCC 3316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471163088232596