Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq25885 89.7 5e-13 seq33636 84.2 2e-11 seq28651 84.2 2e-11 seq4181 84.2 2e-11 >seq25885 Length=2931 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || || ||||| || || | || || || | | Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| || || | || || |||||||||||||| || || | || || ||||| Sbjct 934 GACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAG 875 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||| ||||| |||||||| ||||| ||| || | || || ||| Sbjct 874 CAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAAC 815 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || |||||||| Sbjct 814 ATACAGAAGGAGTCCACGCTCCACTTGGT 786 >seq33636 Length=8621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| ||||| ||||| || || |||||||| || || | Sbjct 4917 GATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAG 4976 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| |||||||| ||||| || || || || || || || Sbjct 4977 CGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 5036 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || | ||||| || || Sbjct 5037 GCAGCGCCTTATCTTCGCTGG 5057 >seq28651 Length=4159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || |||||||| || || | | Sbjct 1425 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC 1484 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || ||| Sbjct 1485 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1544 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 || ||| | ||||| || || ||| Sbjct 1545 CAGCGTCTCATCTTCGCTGGTAAA 1568 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || |||||||| || || | | Sbjct 1699 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAGC 1758 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || ||| Sbjct 1759 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1818 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 || ||| | ||||| || || ||| Sbjct 1819 CAGCGTCTCATCTTCGCTGGTAAA 1842 >seq4181 Length=1006 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| ||||| ||||| || || |||||||| || || | Sbjct 743 GATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAG 802 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| |||||||| ||||| || || || || || || || Sbjct 803 CGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 862 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || | ||||| || || Sbjct 863 GCAGCGCCTTATCTTCGCTGG 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449702411926240