Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq26788 95.1 8e-15
seq33636 91.5 1e-13
seq30320 91.5 1e-13
seq25885 89.7 3e-13
seq4181 87.8 1e-12
>seq26788
Length=2620
Score = 95.1 bits (104), Expect = 8e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||| || || ||||||||| |||| | ||||||||||| | || || |
Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | || | || | |||||||| |||| ||| |||||||| || |||||
Sbjct 2188 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGC 2129
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 2128 GTCTTGACGAAGATCTGCAT 2109
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||| || || |||||||| |||| | ||||||||||| | || || |
Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | || | || | |||||||| |||| ||| |||||||| || |||||
Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845
Query 34958 GTCTTTACAAAGATCTGCATGATAG 34982
|| || || ||||| ||||||||||
Sbjct 1844 GTTTTGACGAAGATTTGCATGATAG 1820
>seq33636
Length=8621
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||| || || |||||||| |||| | ||||||||||| | || || |
Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | || | || | |||||||| |||| ||| |||||||| || |||||
Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652
Query 34958 GTCTTTACAAAGATCTGCATGATAG 34982
|| || || ||||| ||||||||||
Sbjct 4651 GTTTTGACGAAGATTTGCATGATAG 4627
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||| || || |||||||| |||| | ||||||||||| | || || |
Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | || | || | |||||||| || | ||| ||||| || || |||||
Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918
>seq30320
Length=5461
Score = 91.5 bits (100), Expect = 1e-13
Identities = 111/150 (74%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 34829 AGTTGCTTT-CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887
||||| | | || |||||||| || || |||||||| |||| | ||||||||||| |
Sbjct 5230 AGTTGATGTACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 5289
Query 34888 TATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947
|| || ||| ||| | || | ||| | |||||||| |||| || ||||||||
Sbjct 5290 GATCTTCGCTTTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTT 5349
Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||| ||||| || |||||||||||
Sbjct 5350 CCCGGTGAGCGTCTTGACGAAGATCTGCAT 5379
>seq25885
Length=2931
Score = 89.7 bits (98), Expect = 3e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 34746 CATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGT 34805
||||||| |||| | | ||||||| ||| | ||| ||||||||| ||||| ||||
Sbjct 763 CATTTCCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGT 822
Query 34806 CCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTT 34865
| | | | || | || || || || || |||||||||||||| |||||||| ||
Sbjct 823 CGGCCAACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCG 882
Query 34866 GCGGCACCCCCTCCTTGTC 34884
|||| || |||||||||||
Sbjct 883 GCGGAACGCCCTCCTTGTC 901
>seq4181
Length=1006
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||| || || |||||||| |||| | ||||||||||| | || || |
Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | || | || | |||||||| |||| ||| |||||||| || |||||
Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478
Query 34958 GTCTTTACAAAGATCTGCATGAT 34980
|| || || ||||| ||||||||
Sbjct 477 GTTTTGACGAAGATTTGCATGAT 455
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||| || || |||||||| |||| | ||||||||||| | || || |
Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | || | || | |||||||| || | ||| ||||| || || |||||
Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 763 GTCTTGACGAAGATCTGCAT 744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325555030724252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |