Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 123 2e-23
seq10457 104 2e-17
seq33636 96.9 3e-15
seq4181 96.9 3e-15
seq26788 93.3 4e-14
seq30320 82.4 7e-11
>seq25885
Length=2931
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| |||||||| ||||| ||| ||| ||| |||||||||||| |||||
Sbjct 798 GTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCGAGCTGTTTGCCG 857
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || ||||| ||||| || || || | ||| |||||||| |||||| |||
Sbjct 858 GCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTC 917
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || || ||||| | | |||||| || | |||| |||||||| |||| ||
Sbjct 918 ACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTTTTGCCCGTCAATGTC 977
Query 133644 TTTACGAAAATCTGCATG 133661
|| |||||||| ||||||
Sbjct 978 TTCACGAAAATTTGCATG 995
>seq10457
Length=1107
Score = 104 bits (114), Expect = 2e-17
Identities = 147/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCT 133515
|||| |||| ||| ||||| | | ||| || ||| ||| || || ||||||||||
Sbjct 703 TGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCCAACGTTCGGCCG--TCCTCGAGCT 646
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
| ||||| || ||| | ||||| || || | || ||||| |||||||| |||||||
Sbjct 645 GTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCCTCCTTGTCAGTGATCT 586
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| |||| | | ||| || |||| || ||||| || | |||| | ||||||||
Sbjct 585 TCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACCTCCAGCGTGATGACTTTGCCGG 526
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
||| |||||| | |||||| |||||
Sbjct 525 TCAAAGTTTTGATGAAAATTTGCAT 501
>seq33636
Length=8621
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | ||||| ||||||||||| || |||||||| |||||||| ||||||
Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | |||||| | | ||| || || | ||||| ||| || ||||| |||
Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652
Query 133641 GTTTTTACGAAAATCTGCATG 133661
||||| ||||| || ||||||
Sbjct 4651 GTTTTGACGAAGATTTGCATG 4631
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | || || ||||||||||| || |||||||| |||||||| ||||||
Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | |||||| | | ||| || |||| ||||| |||||| ||||| ||
Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || ||||| ||||||||
Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918
>seq4181
Length=1006
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | ||||| ||||||||||| || |||||||| |||||||| ||||||
Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | |||||| | | ||| || || | ||||| ||| || ||||| |||
Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478
Query 133641 GTTTTTACGAAAATCTGCATG 133661
||||| ||||| || ||||||
Sbjct 477 GTTTTGACGAAGATTTGCATG 457
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | || || ||||||||||| || |||||||| |||||||| ||||||
Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | |||||| | | ||| || |||| ||||| |||||| ||||| ||
Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || ||||| ||||||||
Sbjct 763 GTCTTGACGAAGATCTGCAT 744
>seq26788
Length=2620
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | || || ||||||||||| || |||||||| |||||||| ||||||
Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | |||||| | | ||| || || | ||||| ||| || ||||| |||
Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845
Query 133641 GTTTTTACGAAAATCTGCATG 133661
||||| ||||| || ||||||
Sbjct 1844 GTTTTGACGAAGATTTGCATG 1824
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | || || ||||||||||| || || ||||| |||||||| ||||||
Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | |||||| | | ||| || || | ||||| ||| || ||||| ||
Sbjct 2188 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGC 2129
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || ||||| ||||||||
Sbjct 2128 GTCTTGACGAAGATCTGCAT 2109
>seq30320
Length=5461
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | ||||| ||||||||||| || |||||||| |||||||| ||||||
Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||| | ||||| | | ||| || || | |||| ||| || ||||| ||
Sbjct 5300 TTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGAGC 5359
Query 133641 GTTTTTACGAAAATCTGCAT 133660
|| || ||||| ||||||||
Sbjct 5360 GTCTTGACGAAGATCTGCAT 5379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483211067885920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |