Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 154 1e-32
seq10457 107 2e-18
>seq25885
Length=2931
Score = 154 bits (170), Expect = 1e-32
Identities = 162/212 (76%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || | ||| |||||| || |||||||| |||||||| ||||| |||| ||
Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
||||| || || || || |||| ||| ||||| |||| ||||||| ||||||||| |
Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905
Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTT 35704
||||| ||||| | | |||| ||||| |||| |||||||||| |||||||||
Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTT 962
Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| |||||||| || ||||| || || |||||
Sbjct 963 TTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq10457
Length=1107
Score = 107 bits (118), Expect = 2e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 35560 GTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTG 35619
||| || ||||| ||||| |||| || ||||| || || ||||| | ||| ||||| ||
Sbjct 677 GTAGTCAGCCAACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATG 618
Query 35620 GTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCT 35679
|| | |||| || ||||||||| ||||||| |||||| | | | || |||| |
Sbjct 617 ATCAGCGGGAATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTCCAT 558
Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|||||||||| |||||| ||| || ||||||||||| | || || |||||||
Sbjct 557 GCTGTCCACCTCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCATTC 499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450598023196640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |