Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq25885 134 1e-26 seq30328 89.7 5e-13 seq33636 82.4 8e-11 >seq25885 Length=2931 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 ||||| || | ||| || | || | ||| |||||||| ||||| || ||||||||||| Sbjct 765 TTTCCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCG 824 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 |||||| || | ||| |||||||||||||| || || |||| || |||||||| || Sbjct 825 GCCAAC-GTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGG 883 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 ||| | ||| || || ||||| || || || || ||||| ||||| || || Sbjct 884 CGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTC 943 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || | ||| || ||||| || || || || || |||||||||||||| Sbjct 944 CACCTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq30328 Length=6095 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 21745 TCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTTTA 21804 ||||| |||||||| |||||||||||| ||| |||||||||| | ||||| |||||| Sbjct 2102 TCGTCACGCGAAATTAATTCGTTGCTGTGCGTCAGACCGGGCAAAAGGCCTCGTTTTTTA 2161 Query 21805 ATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCAC 21851 | |||||||||| ||||| || || || || || | ||||| || Sbjct 2162 AGCCAAAAAATTGCAGCAAAACTCCCCGAGAAGAAAATCCCCTCAAC 2208 >seq33636 Length=8621 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || ||||| |||||||| ||||| || ||||| || |||||||||||| | Sbjct 4916 CCTCCGCGAAGACGCAAGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 4857 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 | |||| | ||| ||||||||||| |||| ||| Sbjct 4856 AAGGTGCGTCCGTCCTCGAGCTGTTTCCCTGAAAA 4822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505179132904160