Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 134 1e-26
seq30328 89.7 5e-13
seq33636 82.4 8e-11
>seq25885
Length=2931
Score = 134 bits (148), Expect = 1e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542
||||| || | ||| || | || | ||| |||||||| ||||| || |||||||||||
Sbjct 765 TTTCCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCG 824
Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602
|||||| || | ||| |||||||||||||| || || |||| || |||||||| ||
Sbjct 825 GCCAAC-GTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGG 883
Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662
||| | ||| || || ||||| || || || || ||||| ||||| || ||
Sbjct 884 CGGAACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTC 943
Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||| || | ||| || ||||| || || || || || ||||||||||||||
Sbjct 944 CACCTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq30328
Length=6095
Score = 89.7 bits (98), Expect = 5e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 21745 TCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTTTA 21804
||||| |||||||| |||||||||||| ||| |||||||||| | ||||| ||||||
Sbjct 2102 TCGTCACGCGAAATTAATTCGTTGCTGTGCGTCAGACCGGGCAAAAGGCCTCGTTTTTTA 2161
Query 21805 ATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCAC 21851
| |||||||||| ||||| || || || || || | ||||| ||
Sbjct 2162 AGCCAAAAAATTGCAGCAAAACTCCCCGAGAAGAAAATCCCCTCAAC 2208
>seq33636
Length=8621
Score = 82.4 bits (90), Expect = 8e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || ||||| |||||||| ||||| || ||||| || |||||||||||| |
Sbjct 4916 CCTCCGCGAAGACGCAAGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 4857
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581
| |||| | ||| ||||||||||| |||| |||
Sbjct 4856 AAGGTGCGTCCGTCCTCGAGCTGTTTCCCTGAAAA 4822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505179132904160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |