Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 120 3e-22
seq28651 93.3 4e-14
>seq25885
Length=2931
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||| || || || || || ||||||||| || | || |||| |||
Sbjct 786 ACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCCTCG 845
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|||||||| |||||| | || || || || ||||||||||| || ||||| || || |
Sbjct 846 AGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCTTGG 905
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| | |||| | || |||||||| | | || || || | ||| || | ||||
Sbjct 906 ATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTTTTG 965
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||||| || ||||| || ||||||||
Sbjct 966 CCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq28651
Length=4159
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163
|||||| ||| | |||||||||||||| ||||| || | ||||| || || ||||||
Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783
Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
|||| | || | ||||| | || |||||||| ||||| || | ||||| ||
Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723
Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247
||||| ||||||||||| |||||
Sbjct 1722 GAGAGTCTTCACAAAGATCTGCAT 1699
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163
|||||| ||| | |||||||||||||| ||||| || | ||||| || || ||||||
Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509
Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
|||| | || | ||||| | || |||||||| || || || | ||||| ||
Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449
Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247
||||| ||||||||||| |||||
Sbjct 1448 GAGAGTCTTCACAAAGATCTGCAT 1425
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163
|||||| ||| | |||||||||||||| ||||| || | ||||| || || ||||||
Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235
Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
|||| | || | ||||| | || |||||||| || || || | ||||| ||
Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175
Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247
|| || || ||||||||||||||
Sbjct 1174 GAGGGTCTTGACAAAGATTTGCAT 1151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424754651155296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |