Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq28651 140 4e-28 seq26788 125 8e-24 seq30320 123 3e-23 seq33636 116 4e-21 seq4181 113 5e-20 seq20723 105 8e-18 seq19842 100 3e-16 seq25885 98.7 1e-15 seq29861 96.9 4e-15 >seq28651 Length=4159 Score = 140 bits (154), Expect = 4e-28 Identities = 124/154 (81%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 |||||||||||||||||||||||| || ||||||||||| || || || || |||||| | Sbjct 1147 TATAATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGC 1206 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 | || | ||| | ||| ||||||| || || |||||||||||||| || || || || Sbjct 1207 GAGCGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGA 1266 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 ||| |||||||| || || |||||||| ||||| Sbjct 1267 CCAACAGCGTCTCATCTTCGCTGGTAA--AACTC 1298 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || ||||||||||| || ||||| || |||||| | | Sbjct 1698 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAG 1757 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || |||||||||||||| || || || ||||| Sbjct 1758 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1817 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 |||||||| || || |||||||| Sbjct 1818 ACAGCGTCTCATCTTCGCTGGTAA 1841 Score = 125 bits (138), Expect = 8e-24 Identities = 119/151 (79%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || ||||||||||| || || || || |||||| | | Sbjct 1424 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1483 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || |||||||||||||| || || || ||||| Sbjct 1484 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1543 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||| || || |||||||| ||||| Sbjct 1544 ACAGCGTCTCATCTTCGCTGGTAA--AACTC 1572 >seq26788 Length=2620 Score = 125 bits (138), Expect = 8e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||| ||||| || || |||||||| ||| | | Sbjct 2109 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 2168 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| || || || |||||||||||||| ||||| ||||||||| Sbjct 2169 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 2228 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || || ||||||| Sbjct 2229 CAGCGCCTTATCTTCGCTGGTA 2250 Score = 116 bits (128), Expect = 4e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||||||||| ||||| || || ||||| ||||| || || |||||||| ||| Sbjct 1820 CTATCATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGG 1879 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | | || | ||| | || |||| || || || |||||||||||||| || || || | Sbjct 1880 CGAGCGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGG 1939 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||||| || || || ||||||| Sbjct 1940 ACCAGCAGCGCCTTATCTTCGCTGGTA 1966 >seq30320 Length=5461 Score = 123 bits (136), Expect = 3e-23 Identities = 118/150 (79%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||| ||||| || |||||||| || ||| | || Sbjct 5379 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACTCTTGAAGTCGAGGCGAGT 5320 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| || || || |||||||||||||| || || || |||||| Sbjct 5319 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5260 Query 27526 CAGCGTCTAATTTTTGCTGGTA-AGCAACT 27554 ||||| || || || ||||||| | ||||| Sbjct 5259 CAGCGCCTCATCTTCGCTGGTACATCAACT 5230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||| | || || || |||||||| | || || || || ||||| || |||| |||||| Sbjct 5189 TTTTCAGGGAAACAGCTCGAGGACGGACGCACTCTGGCCGACTACAACATCCAGAAGGAA 5130 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||||||||| |||||||| ||||| |||||| Sbjct 5129 TCAACTCTTCATCTCGTCTTGCGCCTTCGTGGTGGA 5094 >seq33636 Length=8621 Score = 116 bits (128), Expect = 4e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||| ||||||||||| ||||| || || ||||| ||||| || || |||||||| ||| Sbjct 4627 CTATCATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGG 4686 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | | || | ||| | || |||| || || || |||||||||||||| || || || | Sbjct 4687 CGAGCGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGG 4746 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||||| || || || ||||||| Sbjct 4747 ACCAGCAGCGCCTCATCTTCGCTGGTA 4773 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||| || || || || || || || ||| | | Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| || || || |||||||||||||| || || || |||||| Sbjct 4978 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5037 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || || ||||||| Sbjct 5038 CAGCGCCTTATCTTCGCTGGTA 5059 >seq4181 Length=1006 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| ||||| || || ||||| ||||| || || |||||||| ||| | Sbjct 455 ATCATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCG 514 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | || |||| || || || |||||||||||||| || || || ||| Sbjct 515 AGCGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 574 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| || || || ||||||| Sbjct 575 CAGCAGCGCCTCATCTTCGCTGGTA 599 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||| || || || || || || || ||| | | Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| || || || |||||||||||||| || || || |||||| Sbjct 804 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 863 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || || ||||||| Sbjct 864 CAGCGCCTTATCTTCGCTGGTA 885 >seq20723 Length=574 Score = 105 bits (116), Expect = 8e-18 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 27402 TATAATG---CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458 ||||||| ||||| || ||||| || || ||||| ||||| || || ||||| || || Sbjct 222 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 281 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 | | | || ||| | ||| |||| || || || |||||||||||||||||||| || Sbjct 282 GGCGAGCGACCCCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGAATTCCGCC 341 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 ||||| ||||| || ||||| || |||| Sbjct 342 GGACCAACAGCGCCTCATTTTCGCGGGTA 370 >seq19842 Length=1839 Score = 100 bits (110), Expect = 3e-16 Identities = 112/149 (75%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 27402 TATAATG---CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458 ||||||| ||||| || ||||| || || ||||| ||||| || || ||||| || || Sbjct 1639 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 1580 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 | | | || ||| | ||| |||| || || || |||| ||||||||||||||| || Sbjct 1579 GGCGAGCGACCCCATCGAGAATGTGAAAGCGAAGATCCAGGGCAAGGAGGGAATTCCGCC 1520 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 ||||| ||||| || ||||| || |||| Sbjct 1519 GGACCAACAGCGCCTCATTTTCGCGGGTA 1491 >seq25885 Length=2931 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || ||||| || || ||| | ||||| ||| || | Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAG--AGCT 937 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | | | ||| ||||| | || || || ||||||||||| |||| || || | Sbjct 936 CGGACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATC 877 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| || || || || || || || || |||||||| | || || | || ||||| | Sbjct 876 AGCAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACA 817 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || ||||| ||||| || || | ||| | ||||| || || ||| Sbjct 816 ACATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGGA 767 >seq29861 Length=4039 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 27402 TATAATG---CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458 ||||||| ||||| || ||||| || || ||||| ||||| || || ||||| || || Sbjct 3992 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 3933 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 | | | || ||| | ||| |||| || || || || ||||||||||||||||| || Sbjct 3932 GGCGAGCGACCCCATCGAGAATGTGAAAGCGAAGATCCATGACAAGGAGGGAATTCCGCC 3873 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 ||||| ||||| | ||||| || |||| Sbjct 3872 GGACCAACAGCGCATCATTTTCGCGGGTA 3844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570062970832960