Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq28651 140 4e-28
seq26788 125 8e-24
seq30320 123 3e-23
seq33636 116 4e-21
seq4181 113 5e-20
seq20723 105 8e-18
seq19842 100 3e-16
seq25885 98.7 1e-15
seq29861 96.9 4e-15
>seq28651
Length=4159
Score = 140 bits (154), Expect = 4e-28
Identities = 124/154 (81%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461
|||||||||||||||||||||||| || ||||||||||| || || || || |||||| |
Sbjct 1147 TATAATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGC 1206
Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521
| || | ||| | ||| ||||||| || || |||||||||||||| || || || ||
Sbjct 1207 GAGCGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGA 1266
Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555
||| |||||||| || || |||||||| |||||
Sbjct 1267 CCAACAGCGTCTCATCTTCGCTGGTAA--AACTC 1298
Score = 129 bits (142), Expect = 7e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || ||||||||||| || ||||| || |||||| | |
Sbjct 1698 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAG 1757
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | ||| ||||||| || || |||||||||||||| || || || |||||
Sbjct 1758 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1817
Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548
|||||||| || || ||||||||
Sbjct 1818 ACAGCGTCTCATCTTCGCTGGTAA 1841
Score = 125 bits (138), Expect = 8e-24
Identities = 119/151 (79%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || ||||||||||| || || || || |||||| | |
Sbjct 1424 AATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAG 1483
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | ||| ||||||| || || |||||||||||||| || || || |||||
Sbjct 1484 CGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 1543
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555
|||||||| || || |||||||| |||||
Sbjct 1544 ACAGCGTCTCATCTTCGCTGGTAA--AACTC 1572
>seq26788
Length=2620
Score = 125 bits (138), Expect = 8e-24
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| ||||| ||||| || || |||||||| ||| | |
Sbjct 2109 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC 2168
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || |||| || || || |||||||||||||| ||||| |||||||||
Sbjct 2169 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 2228
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| || || || |||||||
Sbjct 2229 CAGCGCCTTATCTTCGCTGGTA 2250
Score = 116 bits (128), Expect = 4e-21
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
|||| ||||||||||| ||||| || || ||||| ||||| || || |||||||| |||
Sbjct 1820 CTATCATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGG 1879
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
| | || | ||| | || |||| || || || |||||||||||||| || || || |
Sbjct 1880 CGAGCGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGG 1939
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTA 27547
|||||||||| || || || |||||||
Sbjct 1940 ACCAGCAGCGCCTTATCTTCGCTGGTA 1966
>seq30320
Length=5461
Score = 123 bits (136), Expect = 3e-23
Identities = 118/150 (79%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| ||||| ||||| || |||||||| || ||| | ||
Sbjct 5379 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACTCTTGAAGTCGAGGCGAGT 5320
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || |||| || || || |||||||||||||| || || || ||||||
Sbjct 5319 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5260
Query 27526 CAGCGTCTAATTTTTGCTGGTA-AGCAACT 27554
||||| || || || ||||||| | |||||
Sbjct 5259 CAGCGCCTCATCTTCGCTGGTACATCAACT 5230
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
||| | || || || |||||||| | || || || || ||||| || |||| ||||||
Sbjct 5189 TTTTCAGGGAAACAGCTCGAGGACGGACGCACTCTGGCCGACTACAACATCCAGAAGGAA 5130
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|| ||||||||||| |||||||| ||||| ||||||
Sbjct 5129 TCAACTCTTCATCTCGTCTTGCGCCTTCGTGGTGGA 5094
>seq33636
Length=8621
Score = 116 bits (128), Expect = 4e-21
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
|||| ||||||||||| ||||| || || ||||| ||||| || || |||||||| |||
Sbjct 4627 CTATCATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGG 4686
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
| | || | ||| | || |||| || || || |||||||||||||| || || || |
Sbjct 4687 CGAGCGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGG 4746
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTA 27547
|||||||||| || || || |||||||
Sbjct 4747 ACCAGCAGCGCCTCATCTTCGCTGGTA 4773
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| ||||| || || || || || || || ||| | |
Sbjct 4918 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 4977
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || |||| || || || |||||||||||||| || || || ||||||
Sbjct 4978 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5037
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| || || || |||||||
Sbjct 5038 CAGCGCCTTATCTTCGCTGGTA 5059
>seq4181
Length=1006
Score = 113 bits (124), Expect = 5e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||||||||| ||||| || || ||||| ||||| || || |||||||| ||| |
Sbjct 455 ATCATGCAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCG 514
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
| || | ||| | || |||| || || || |||||||||||||| || || || |||
Sbjct 515 AGCGACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 574
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547
|||||||| || || || |||||||
Sbjct 575 CAGCAGCGCCTCATCTTCGCTGGTA 599
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||||| ||||| || || || || || || || ||| | |
Sbjct 744 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC 803
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || |||| || || || |||||||||||||| || || || ||||||
Sbjct 804 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 863
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| || || || |||||||
Sbjct 864 CAGCGCCTTATCTTCGCTGGTA 885
>seq20723
Length=574
Score = 105 bits (116), Expect = 8e-18
Identities = 113/149 (76%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 27402 TATAATG---CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458
||||||| ||||| || ||||| || || ||||| ||||| || || ||||| || ||
Sbjct 222 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 281
Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518
| | | || ||| | ||| |||| || || || |||||||||||||||||||| ||
Sbjct 282 GGCGAGCGACCCCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGAATTCCGCC 341
Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
||||| ||||| || ||||| || ||||
Sbjct 342 GGACCAACAGCGCCTCATTTTCGCGGGTA 370
>seq19842
Length=1839
Score = 100 bits (110), Expect = 3e-16
Identities = 112/149 (75%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 27402 TATAATG---CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458
||||||| ||||| || ||||| || || ||||| ||||| || || ||||| || ||
Sbjct 1639 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 1580
Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518
| | | || ||| | ||| |||| || || || |||| ||||||||||||||| ||
Sbjct 1579 GGCGAGCGACCCCATCGAGAATGTGAAAGCGAAGATCCAGGGCAAGGAGGGAATTCCGCC 1520
Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
||||| ||||| || ||||| || ||||
Sbjct 1519 GGACCAACAGCGCCTCATTTTCGCGGGTA 1491
>seq25885
Length=2931
Score = 98.7 bits (108), Expect = 1e-15
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| | || ||||| || || ||| | ||||| ||| || |
Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAG--AGCT 937
Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
|| | | | ||| ||||| | || || || ||||||||||| |||| || || |
Sbjct 936 CGGACACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATC 877
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583
|||| || || || || || || || || |||||||| | || || | || ||||| |
Sbjct 876 AGCAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACA 817
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| | || ||||| ||||| || || | ||| | ||||| || || |||
Sbjct 816 ACATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGGA 767
>seq29861
Length=4039
Score = 96.9 bits (106), Expect = 4e-15
Identities = 111/149 (74%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 27402 TATAATG---CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458
||||||| ||||| || ||||| || || ||||| ||||| || || ||||| || ||
Sbjct 3992 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 3933
Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518
| | | || ||| | ||| |||| || || || || ||||||||||||||||| ||
Sbjct 3932 GGCGAGCGACCCCATCGAGAATGTGAAAGCGAAGATCCATGACAAGGAGGGAATTCCGCC 3873
Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
||||| ||||| | ||||| || ||||
Sbjct 3872 GGACCAACAGCGCATCATTTTCGCGGGTA 3844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570062970832960
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