Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq7557 145 2e-30
>seq7557
Length=458
Score = 145 bits (160), Expect = 2e-30
Identities = 248/354 (70%), Gaps = 12/354 (3%)
Strand=Plus/Plus
Query 40044 CCAGCACGCGGGCCGCGTCCTTCAT---CGCGTTGCGCGCCTTGATCCGGCCGAAGGTCC 40100
||||||||||| || |||| || ||| || |||| || | | |||||||
Sbjct 111 CCAGCACGCGGCCCACGTCGCGGATAACCGCTTTCGCCGCCATGGTAC---CGAAGGTGA 167
Query 40101 CGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGC 40160
|||||| | ||| ||| |||||| |||| | |||| | || |||| | |||
Sbjct 168 TGATCTGCGATACCGCTTCGCGGCCGTACATCTCCGCCACGTGCTCAATTACCTGGTCGC 227
Query 40161 GA--CGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAG 40218
| | || || |||||||| ||| | ||||||||| || || || || ||||||||
Sbjct 228 GCTTCTCCATGCA--GAAGTCGACGTCGAAGTCGGGCATCGAGACACGTTCCGGGTTCAG 285
Query 40219 GAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGA-TCCCGAGGCAGT 40277
||| || ||||| | || || |||| |||||||||||||||| | | | ||| |
Sbjct 286 GAAGCGTTCGAACAGCAGGTCGAATTCCAACGGATCGAGGTCGGTGATTTTCAACGCA-T 344
Query 40278 AGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCT 40337
|||| |||||||||||||| | ||||| ||||| || || ||| |||| ||| ||||
Sbjct 345 AGGCCACCAGCGAACCGGCACCGGAGCCGCGCCCCGGCCCCACCGGCACGTTGTTGTCCT 404
Query 40338 TGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCT 40391
| | ||| ||| || || |||| |||||||||| ||||| |||||||
Sbjct 405 TCGACCACTGGATAAACTCCATCACGATCAGGAAGTAGCCGGGGAACCCCATCT 458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160340287299192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |