Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq7557 145 2e-30 >seq7557 Length=458 Score = 145 bits (160), Expect = 2e-30 Identities = 248/354 (70%), Gaps = 12/354 (3%) Strand=Plus/Plus Query 40044 CCAGCACGCGGGCCGCGTCCTTCAT---CGCGTTGCGCGCCTTGATCCGGCCGAAGGTCC 40100 ||||||||||| || |||| || ||| || |||| || | | ||||||| Sbjct 111 CCAGCACGCGGCCCACGTCGCGGATAACCGCTTTCGCCGCCATGGTAC---CGAAGGTGA 167 Query 40101 CGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGC 40160 |||||| | ||| ||| |||||| |||| | |||| | || |||| | ||| Sbjct 168 TGATCTGCGATACCGCTTCGCGGCCGTACATCTCCGCCACGTGCTCAATTACCTGGTCGC 227 Query 40161 GA--CGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAG 40218 | | || || |||||||| ||| | ||||||||| || || || || |||||||| Sbjct 228 GCTTCTCCATGCA--GAAGTCGACGTCGAAGTCGGGCATCGAGACACGTTCCGGGTTCAG 285 Query 40219 GAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGA-TCCCGAGGCAGT 40277 ||| || ||||| | || || |||| |||||||||||||||| | | | ||| | Sbjct 286 GAAGCGTTCGAACAGCAGGTCGAATTCCAACGGATCGAGGTCGGTGATTTTCAACGCA-T 344 Query 40278 AGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCT 40337 |||| |||||||||||||| | ||||| ||||| || || ||| |||| ||| |||| Sbjct 345 AGGCCACCAGCGAACCGGCACCGGAGCCGCGCCCCGGCCCCACCGGCACGTTGTTGTCCT 404 Query 40338 TGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCT 40391 | | ||| ||| || || |||| |||||||||| ||||| ||||||| Sbjct 405 TCGACCACTGGATAAACTCCATCACGATCAGGAAGTAGCCGGGGAACCCCATCT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160340287299192