Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq25885 87.8 1e-12 >seq25885 Length=2931 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || | || || ||| || || | || || || ||| | Sbjct 994 ATGCAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCG 935 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || || || || ||||| || || |||||| ||| | Sbjct 934 GACACTGTGGACAAT--GTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATC 877 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||||||| | || || ||||| ||||| | || |||| ||| | ||| |||| |||| Sbjct 876 AGCAACGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACA 817 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| ||| | || ||||| | ||| | || ||||| Sbjct 816 ACATACAGAAGGAGTCCACGCTCCACTTGGTCCTCCGTCTCCGGGGCGG 768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355711868870316