Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq28651 127 5e-24 seq26788 120 7e-22 seq30320 113 1e-19 seq33636 111 4e-19 seq4181 111 4e-19 seq18571 102 2e-16 seq20723 98.7 2e-15 >seq28651 Length=4159 Score = 127 bits (140), Expect = 5e-24 Identities = 117/147 (80%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || || |||||||| || || | || ||||||||||||||||| Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||||| || ||||||||||| ||| ||||| ||||||||||||||||| || Sbjct 1781 GCCTTCACATTCTCGATGGTGTC---GCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCG 1725 Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| ||||| | ||||||| Sbjct 1724 GTGAGAGTCTTCACAAAGATCTGCATT 1698 Score = 122 bits (134), Expect = 2e-22 Identities = 116/147 (79%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || || |||||||| || || | || ||||||||||||||||| Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||||| || ||||||||||| ||| ||||| ||||| ||||||||||| || Sbjct 1507 GCCTTCACATTCTCGATGGTGTC---GCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCG 1451 Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115 ||||||||||| ||||| | ||||||| Sbjct 1450 GTGAGAGTCTTCACAAAGATCTGCATT 1424 Score = 114 bits (126), Expect = 3e-20 Identities = 116/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || || |||||||| || || | || ||||||||||||||||| Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088 ||||| || ||||||||||| ||| ||||| ||||| ||||||||||| || Sbjct 1233 GCCTTCACATTCTCGATGGTGTC---GCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCG 1177 Query 211089 GTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||||| ||||| ||||| | |||||| || Sbjct 1176 GTGAGGGTCTTGACAAAGATTTGCATTATA 1147 >seq26788 Length=2620 Score = 120 bits (132), Expect = 7e-22 Identities = 113/143 (79%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||||||||| || ||||| || |||| || ||||||||||||||||| | Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| ||||||||||| ||| || ||||| || ||||| ||||| || ||| Sbjct 2188 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 2132 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 2131 AGCGTCTTGACGAAGATCTGCAT 2109 Score = 111 bits (122), Expect = 4e-19 Identities = 111/143 (78%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||||||||| || ||||| || || | || ||||||||||||||||| | Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| ||||||||||| ||| || ||||| || ||||| ||||| || ||| Sbjct 1904 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 1848 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || | ||||| Sbjct 1847 AGAGTTTTGACGAAGATTTGCAT 1825 >seq30320 Length=5461 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| ||||| || ||||| || || | || ||||||||||||||||| | Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| |||||||||||| || || || |||||||| ||||| || ||||| Sbjct 5300 TTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGAGC 5359 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 5360 GTCTTGACGAAGATCTGCAT 5379 >seq33636 Length=8621 Score = 111 bits (122), Expect = 4e-19 Identities = 111/143 (78%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||||||||| || ||||| || || | || ||||||||||||||||| | Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| ||||||||||| ||| || || ||||| ||||| || || || ||| Sbjct 4997 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTG 4941 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 4940 AGCGTCTTGACGAAGATCTGCAT 4918 Score = 105 bits (116), Expect = 2e-17 Identities = 110/143 (77%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| ||||| || ||||| || || | || ||||||||||||||||| | Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| ||||||||||| ||| || ||||| || ||||| ||||| || ||| Sbjct 4711 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 4655 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || | ||||| Sbjct 4654 AGAGTTTTGACGAAGATTTGCAT 4632 >seq4181 Length=1006 Score = 111 bits (122), Expect = 4e-19 Identities = 111/143 (78%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||||||||| || ||||| || || | || ||||||||||||||||| | Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| ||||||||||| ||| || || ||||| ||||| || || || ||| Sbjct 823 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTG 767 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 766 AGCGTCTTGACGAAGATCTGCAT 744 Score = 105 bits (116), Expect = 2e-17 Identities = 110/143 (77%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| ||||| || ||||| || || | || ||||||||||||||||| | Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| ||||||||||| ||| || ||||| || ||||| ||||| || ||| Sbjct 537 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 481 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || | ||||| Sbjct 480 AGAGTTTTGACGAAGATTTGCAT 458 >seq18571 Length=770 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| || ||||| |||||||| || |||| ||| | ||||||||||||||| | Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || |||||||||||| || || || || ||||| ||||| || |||||| Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 457 Query 211095 GTCTTTACAAA 211105 || || || || Sbjct 456 GTTTTGACGAA 446 >seq20723 Length=574 Score = 98.7 bits (108), Expect = 2e-15 Identities = 103/134 (77%), Gaps = 6/134 (4%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || ||||| || ||||| |||||||| || |||| ||| ||||||||||||||||| | Sbjct 368 CCCGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCT 309 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || ||||||| ||| ||| || || || || ||||| ||||| || ||| Sbjct 308 TTCACATTCTCGATGGGGTC---GCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTG 252 Query 211092 AGAGTCTTTACAAA 211105 ||||| || || || Sbjct 251 AGAGTTTTGACGAA 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158636529452420