Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq28651 127 5e-24
seq26788 120 7e-22
seq30320 113 1e-19
seq33636 111 4e-19
seq4181 111 4e-19
seq18571 102 2e-16
seq20723 98.7 2e-15
>seq28651
Length=4159
Score = 127 bits (140), Expect = 5e-24
Identities = 117/147 (80%), Gaps = 6/147 (4%)
Strand=Plus/Minus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || |||||||| || || |||||||| || || | || |||||||||||||||||
Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088
||||| || ||||||||||| ||| ||||| ||||||||||||||||| ||
Sbjct 1781 GCCTTCACATTCTCGATGGTGTC---GCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCG 1725
Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115
||||||||||| ||||| | |||||||
Sbjct 1724 GTGAGAGTCTTCACAAAGATCTGCATT 1698
Score = 122 bits (134), Expect = 2e-22
Identities = 116/147 (79%), Gaps = 6/147 (4%)
Strand=Plus/Minus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || |||||||| || || |||||||| || || | || |||||||||||||||||
Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088
||||| || ||||||||||| ||| ||||| ||||| ||||||||||| ||
Sbjct 1507 GCCTTCACATTCTCGATGGTGTC---GCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCG 1451
Query 211089 GTGAGAGTCTTTACAAACACCTGCATT 211115
||||||||||| ||||| | |||||||
Sbjct 1450 GTGAGAGTCTTCACAAAGATCTGCATT 1424
Score = 114 bits (126), Expect = 3e-20
Identities = 116/150 (77%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || |||||||| || || |||||||| || || | || |||||||||||||||||
Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088
||||| || ||||||||||| ||| ||||| ||||| ||||||||||| ||
Sbjct 1233 GCCTTCACATTCTCGATGGTGTC---GCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCG 1177
Query 211089 GTGAGAGTCTTTACAAACACCTGCATTTTA 211118
||||| ||||| ||||| | |||||| ||
Sbjct 1176 GTGAGGGTCTTGACAAAGATTTGCATTATA 1147
>seq26788
Length=2620
Score = 120 bits (132), Expect = 7e-22
Identities = 113/143 (79%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||||||||| || ||||| || |||| || ||||||||||||||||| |
Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| ||||||||||| ||| || ||||| || ||||| ||||| || |||
Sbjct 2188 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 2132
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || | ||||||
Sbjct 2131 AGCGTCTTGACGAAGATCTGCAT 2109
Score = 111 bits (122), Expect = 4e-19
Identities = 111/143 (78%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||||||||| || ||||| || || | || ||||||||||||||||| |
Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| ||||||||||| ||| || ||||| || ||||| ||||| || |||
Sbjct 1904 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 1848
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
||||| || || || | |||||
Sbjct 1847 AGAGTTTTGACGAAGATTTGCAT 1825
>seq30320
Length=5461
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||| ||||| || ||||| || || | || ||||||||||||||||| |
Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|||||||| |||||||||||| || || || |||||||| ||||| || |||||
Sbjct 5300 TTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTGAGC 5359
Query 211095 GTCTTTACAAACACCTGCAT 211114
||||| || || | ||||||
Sbjct 5360 GTCTTGACGAAGATCTGCAT 5379
>seq33636
Length=8621
Score = 111 bits (122), Expect = 4e-19
Identities = 111/143 (78%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||||||||| || ||||| || || | || ||||||||||||||||| |
Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| ||||||||||| ||| || || ||||| ||||| || || || |||
Sbjct 4997 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTG 4941
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || | ||||||
Sbjct 4940 AGCGTCTTGACGAAGATCTGCAT 4918
Score = 105 bits (116), Expect = 2e-17
Identities = 110/143 (77%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||| ||||| || ||||| || || | || ||||||||||||||||| |
Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| ||||||||||| ||| || ||||| || ||||| ||||| || |||
Sbjct 4711 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 4655
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
||||| || || || | |||||
Sbjct 4654 AGAGTTTTGACGAAGATTTGCAT 4632
>seq4181
Length=1006
Score = 111 bits (122), Expect = 4e-19
Identities = 111/143 (78%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||||||||| || ||||| || || | || ||||||||||||||||| |
Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| ||||||||||| ||| || || ||||| ||||| || || || |||
Sbjct 823 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTG 767
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || | ||||||
Sbjct 766 AGCGTCTTGACGAAGATCTGCAT 744
Score = 105 bits (116), Expect = 2e-17
Identities = 110/143 (77%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| |||||||| ||||| || ||||| || || | || ||||||||||||||||| |
Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| ||||||||||| ||| || ||||| || ||||| ||||| || |||
Sbjct 537 TTCACGTTCTCGATGGTGTC---GCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTG 481
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
||||| || || || | |||||
Sbjct 480 AGAGTTTTGACGAAGATTTGCAT 458
>seq18571
Length=770
Score = 102 bits (112), Expect = 2e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||| || ||||| |||||||| || |||| ||| | ||||||||||||||| |
Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
||||| || |||||||||||| || || || || ||||| ||||| || ||||||
Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 457
Query 211095 GTCTTTACAAA 211105
|| || || ||
Sbjct 456 GTTTTGACGAA 446
>seq20723
Length=574
Score = 98.7 bits (108), Expect = 2e-15
Identities = 103/134 (77%), Gaps = 6/134 (4%)
Strand=Plus/Minus
Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034
|| ||||| || ||||| |||||||| || |||| ||| ||||||||||||||||| |
Sbjct 368 CCCGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCT 309
Query 211035 TTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||||| || ||||||| ||| ||| || || || || ||||| ||||| || |||
Sbjct 308 TTCACATTCTCGATGGGGTC---GCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTG 252
Query 211092 AGAGTCTTTACAAA 211105
||||| || || ||
Sbjct 251 AGAGTTTTGACGAA 238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158636529452420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |