Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 161 2e-34
seq10457 113 1e-19
seq28651 95.1 3e-14
seq26788 91.5 4e-13
seq33636 86.0 1e-11
seq18571 86.0 1e-11
seq4181 86.0 1e-11
>seq25885
Length=2931
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | |||||| ||||| || || || | ||||| |||||||| |||| || ||
Sbjct 783 AGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCC 842
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || || |||||||| || ||||| || || ||||||| || |||||||||
Sbjct 843 TCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCT 902
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||| || | ||||| ||| | ||||| || || ||||||||
Sbjct 903 TGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTT 962
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||||||| || || | ||| | ||||||
Sbjct 963 TTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq10457
Length=1107
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| |||||||| | ||||| || || || ||| ||| || ||||| |||
Sbjct 721 CGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCCAACGTT 662
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || ||||| || || || || | | ||| || || || | ||||| ||
Sbjct 661 CGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCC 602
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||| |||||||| |||| |||| | | ||||| || | |
Sbjct 601 TCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACCTCCAGC 542
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| ||||| ||||||||||| ||||| | |||||||
Sbjct 541 GTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500
>seq28651
Length=4159
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||||||||| || || |||||||| || || || || |||||||| ||||||||
Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||||||| ||||||||||| | || || || | |||||||||||||| ||
Sbjct 1233 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1174
Query 225691 AAAGTTTTTATGAACACTTGCATTTTA 225717
| || || | || | ||||||| ||
Sbjct 1173 AGGGTCTTGACAAAGATTTGCATTATA 1147
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||||||||| || || |||||||| || || || || |||||||| ||||||||
Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||||||| ||||||||||| | || || || | |||||||||||||| ||
Sbjct 1507 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1448
Query 225691 AAAGTTTTTATGAACACTTGCATT 225714
| ||| || | || | ||||||
Sbjct 1447 AGAGTCTTCACAAAGATCTGCATT 1424
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||||||||| || || |||||||| || || || || |||||||| ||||||||
Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||||||| ||||||||||| | || || || | |||||||||||||| ||
Sbjct 1781 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGTG 1722
Query 225691 AAAGTTTTTATGAACACTTGCATT 225714
| ||| || | || | ||||||
Sbjct 1721 AGAGTCTTCACAAAGATCTGCATT 1698
>seq26788
Length=2620
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|||||||||||||| || || ||||| ||||| || || |||||||| ||||||||
Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
||||| ||||||||||| | || || || | ||||| ||||| || || | |
Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||| | ||| | ||||||
Sbjct 1844 GTTTTGACGAAGATTTGCAT 1825
>seq33636
Length=8621
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||||||||| || || || ||||| ||||| || || |||||||| ||||||||
Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
||||| ||||||||||| | || || || | ||||| ||||| || || | |
Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||| | ||| | ||||||
Sbjct 4651 GTTTTGACGAAGATTTGCAT 4632
>seq18571
Length=770
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
|||||||| || || || |||||||| |||||||| || | |||||| ||||||||
Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|||||| ||||||||||| | || || || | ||||| ||||| || || | |
Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 457
Query 225694 GTTTTTATGAACACTTG 225710
||||| | ||| | |||
Sbjct 456 GTTTTGACGAAAATTTG 440
>seq4181
Length=1006
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||||||||| || || || ||||| ||||| || || |||||||| ||||||||
Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
||||| ||||||||||| | || || || | ||||| ||||| || || | |
Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||| | ||| | ||||||
Sbjct 477 GTTTTGACGAAGATTTGCAT 458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192000885847352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |