Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq25885 161 2e-34 seq10457 113 1e-19 seq28651 95.1 3e-14 seq26788 91.5 4e-13 seq33636 86.0 1e-11 seq18571 86.0 1e-11 seq4181 86.0 1e-11 >seq25885 Length=2931 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| ||||| || || || | ||||| |||||||| |||| || || Sbjct 783 AGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGTTCGTCCGTCC 842 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| || ||||| || || ||||||| || ||||||||| Sbjct 843 TCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCCCTCCTTGTCT 902 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || | ||||| ||| | ||||| || || |||||||| Sbjct 903 TGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTT 962 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | |||||| Sbjct 963 TTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq10457 Length=1107 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| | ||||| || || || ||| ||| || ||||| ||| Sbjct 721 CGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCCAACGTT 662 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || ||||| || || || || | | ||| || || || | ||||| || Sbjct 661 CGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGAATGCCC 602 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||| |||||||| |||| |||| | | ||||| || | | Sbjct 601 TCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTCCATGCTGTCCACCTCCAGC 542 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| ||||||||||| ||||| | ||||||| Sbjct 541 GTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500 >seq28651 Length=4159 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| || || |||||||| || || || || |||||||| |||||||| Sbjct 1293 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1234 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| ||||||||||| | || || || | |||||||||||||| || Sbjct 1233 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1174 Query 225691 AAAGTTTTTATGAACACTTGCATTTTA 225717 | || || | || | ||||||| || Sbjct 1173 AGGGTCTTGACAAAGATTTGCATTATA 1147 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| || || |||||||| || || || || |||||||| |||||||| Sbjct 1567 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1508 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| ||||||||||| | || || || | |||||||||||||| || Sbjct 1507 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGTG 1448 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | ||| || | || | |||||| Sbjct 1447 AGAGTCTTCACAAAGATCTGCATT 1424 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| || || |||||||| || || || || |||||||| |||||||| Sbjct 1841 TTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 1782 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| ||||||||||| | || || || | |||||||||||||| || Sbjct 1781 GCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGTG 1722 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | ||| || | || | |||||| Sbjct 1721 AGAGTCTTCACAAAGATCTGCATT 1698 >seq26788 Length=2620 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||||||||| || || ||||| ||||| || || |||||||| |||||||| Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| | || || || | ||||| ||||| || || | | Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 1844 GTTTTGACGAAGATTTGCAT 1825 >seq33636 Length=8621 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || || ||||| ||||| || || |||||||| |||||||| Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| | || || || | ||||| ||||| || || | | Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 4651 GTTTTGACGAAGATTTGCAT 4632 >seq18571 Length=770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 |||||||| || || || |||||||| |||||||| || | |||||| |||||||| Sbjct 576 CCAGCGAAAATGAGGCGCTGTTGGTCCGGCGGAATTCCCTGCTTGTCCTGGATCTTCGCT 517 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| ||||||||||| | || || || | ||||| ||||| || || | | Sbjct 516 TTCACATTCTCGATGGTGTCACTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGA 457 Query 225694 GTTTTTATGAACACTTG 225710 ||||| | ||| | ||| Sbjct 456 GTTTTGACGAAAATTTG 440 >seq4181 Length=1006 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| || || || ||||| ||||| || || |||||||| |||||||| Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| | || || || | ||||| ||||| || || | | Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | ||| | |||||| Sbjct 477 GTTTTGACGAAGATTTGCAT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192000885847352