Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 125 2e-23
seq30320 93.3 1e-13
seq28651 93.3 1e-13
seq33636 91.5 3e-13
seq4181 91.5 3e-13
>seq25885
Length=2931
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|| ||| | |||||| | || || || ||||| || || |||||||| ||||| || ||
Sbjct 773 CCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGT 832
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
|| || || || || ||| ||||||||||| |||| ||||| |||| || | ||
Sbjct 833 TCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCC 892
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||||| ||||| || || || ||| | || || |||| || ||||| || || |
Sbjct 893 CTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAA 952
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || ||||||||||| | ||||||||||| | |||||
Sbjct 953 AGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq30320
Length=5461
Score = 93.3 bits (102), Expect = 1e-13
Identities = 107/143 (75%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| |||||||| || | ||||||||||| || ||| || ||||| || || || || |
Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299
Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
|| || |||| | | |||| ||| ||| ||||||||||| || || || || |||
Sbjct 5300 TTCACGTTCTCGATGGTGTC---ACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTG 5356
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| ||||||| ||||||
Sbjct 5357 AGCGTCTTGACGAAGATCTGCAT 5379
>seq28651
Length=4159
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019
|||| || |||||||| || | ||| ||||||| | ||| || ||||| || || || |
Sbjct 1843 TTTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCT 1784
Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079
| || ||| |||| | | |||| ||| ||||| ||||| || || ||||| |
Sbjct 1783 TCGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGG 1724
Query 152080 TGAGAGTCTTCACGAAGACCTGCATT 152105
||||||||||||| |||| |||||||
Sbjct 1723 TGAGAGTCTTCACAAAGATCTGCATT 1698
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019
|||| || |||||||| || | ||| ||||||| | ||| || ||||| || || || |
Sbjct 1569 TTTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCT 1510
Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079
| || ||| |||| | | |||| ||| ||||| || || || || ||||| |
Sbjct 1509 TCGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGG 1450
Query 152080 TGAGAGTCTTCACGAAGACCTGCATT 152105
||||||||||||| |||| |||||||
Sbjct 1449 TGAGAGTCTTCACAAAGATCTGCATT 1424
>seq33636
Length=8621
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| ||||||||||| | ||||||||||| || ||| || ||||| || || || || |
Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| || |||| | | |||| ||| ||||| || || || ||||| || |||||
Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938
Query 152085 GTCTTCACGAAGACCTGCAT 152104
||||| ||||||| ||||||
Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918
>seq4181
Length=1006
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| ||||||||||| | ||||||||||| || ||| || ||||| || || || || |
Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| || |||| | | |||| ||| ||||| || || || ||||| || |||||
Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764
Query 152085 GTCTTCACGAAGACCTGCAT 152104
||||| ||||||| ||||||
Sbjct 763 GTCTTGACGAAGATCTGCAT 744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153307700217068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |