Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq25885 125 2e-23 seq30320 93.3 1e-13 seq28651 93.3 1e-13 seq33636 91.5 3e-13 seq4181 91.5 3e-13 >seq25885 Length=2931 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 || ||| | |||||| | || || || ||||| || || |||||||| ||||| || || Sbjct 773 CCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAACGT 832 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 || || || || || ||| ||||||||||| |||| ||||| |||| || | || Sbjct 833 TCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGAACGCC 892 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| ||||| || || || ||| | || || |||| || ||||| || || | Sbjct 893 CTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCGAGCTCTCCACCTCCAA 952 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || ||||||||||| | ||||||||||| | ||||| Sbjct 953 AGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq30320 Length=5461 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| || | ||||||||||| || ||| || ||||| || || || || | Sbjct 5240 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 5299 Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || |||| | | |||| ||| ||| ||||||||||| || || || || ||| Sbjct 5300 TTCACGTTCTCGATGGTGTC---ACTCGCCTCGACTTCAAGAGTGATGGTCTTCCCGGTG 5356 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 5357 AGCGTCTTGACGAAGATCTGCAT 5379 >seq28651 Length=4159 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 |||| || |||||||| || | ||| ||||||| | ||| || ||||| || || || | Sbjct 1843 TTTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCT 1784 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | || ||| |||| | | |||| ||| ||||| ||||| || || ||||| | Sbjct 1783 TCGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGG 1724 Query 152080 TGAGAGTCTTCACGAAGACCTGCATT 152105 ||||||||||||| |||| ||||||| Sbjct 1723 TGAGAGTCTTCACAAAGATCTGCATT 1698 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 |||| || |||||||| || | ||| ||||||| | ||| || ||||| || || || | Sbjct 1569 TTTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCT 1510 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | || ||| |||| | | |||| ||| ||||| || || || || ||||| | Sbjct 1509 TCGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGG 1450 Query 152080 TGAGAGTCTTCACGAAGACCTGCATT 152105 ||||||||||||| |||| ||||||| Sbjct 1449 TGAGAGTCTTCACAAAGATCTGCATT 1424 >seq33636 Length=8621 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||| | ||||||||||| || ||| || ||||| || || || || | Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || || |||| | | |||| ||| ||||| || || || ||||| || ||||| Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| ||||||| |||||| Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918 >seq4181 Length=1006 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||| | ||||||||||| || ||| || ||||| || || || || | Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || || |||| | | |||| ||| ||||| || || || ||||| || ||||| Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| ||||||| |||||| Sbjct 763 GTCTTGACGAAGATCTGCAT 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153307700217068