Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 152 1e-31
seq28651 113 9e-20
seq30320 109 1e-18
seq10457 109 1e-18
seq33636 104 5e-17
seq26788 104 5e-17
seq4181 104 5e-17
seq29861 89.7 1e-12
seq20723 89.7 1e-12
seq30621 84.2 5e-11
>seq25885
Length=2931
Score = 152 bits (168), Expect = 1e-31
Identities = 172/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || || || || |||| || | |||| || || || ||||||||||| ||
Sbjct 768 CCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCC 827
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| ||| || || ||||| || ||||| ||||| ||||||| ||||| || || ||||
Sbjct 828 AACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGA 887
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051
| |||||||||||||||||||| | || || | || | |||||||| |||| || ||
Sbjct 888 ACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCG-AGCTCTCCAC 946
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||||||| || |||||||| ||||| ||||| || |||||
Sbjct 947 CTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994
>seq28651
Length=4159
Score = 113 bits (124), Expect = 9e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015
||| || || ||||| | ||| |||||||| || || ||||||||||| ||||||||
Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|| || || | ||||| ||||| || || |||||||||||||||||||| || ||
Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723
Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100
| |||||| || || |||||||||
Sbjct 1722 GAGAGTCTTCACAAAGATCTGCATT 1698
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015
||| || || ||||| | ||| |||||||| || || ||||||||||| ||||||||
Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|| || || | ||||| ||||| || || |||||||| ||||||||||| || ||
Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449
Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100
| |||||| || || |||||||||
Sbjct 1448 GAGAGTCTTCACAAAGATCTGCATT 1424
Score = 100 bits (110), Expect = 6e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015
||| || || ||||| | ||| |||||||| || || ||||||||||| ||||||||
Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235
Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|| || || | ||||| ||||| || || |||||||| ||||||||||| || ||
Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175
Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100
| ||||| || || || ||||||
Sbjct 1174 GAGGGTCTTGACAAAGATTTGCATT 1150
>seq30320
Length=5461
Score = 109 bits (120), Expect = 1e-18
Identities = 115/150 (77%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 282951 AGTTGTT-TCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009
||||| | | || || ||||| | || || ||||| ||| || ||||||||||| ||
Sbjct 5230 AGTTGATGTACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 5289
Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069
|||||| ||||| ||| | ||||| ||||| || |||||||| |||||||| |||||
Sbjct 5290 GATCTTCGCTTTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTT 5349
Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || | ||||| ||||| ||||||||
Sbjct 5350 CCCGGTGAGCGTCTTGACGAAGATCTGCAT 5379
>seq10457
Length=1107
Score = 109 bits (120), Expect = 1e-18
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || ||||| || || || |||| ||| || || || | |||||||||
Sbjct 727 CCGCCCCGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCC 668
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| ||| ||||| ||||| || ||||| |||||||| | ||| || || || ||| | |||
Sbjct 667 AACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGA 608
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051
|| ||||||||||| |||||| || || | |||| | ||||| | ||| || ||
Sbjct 607 ATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTCC-ATGCTGTCCAC 549
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| || ||||| || || |||||||| || | ||| || ||||||
Sbjct 548 CTCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500
>seq33636
Length=8621
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | || || ||||| ||| || ||||||||||| |||||||| |||
Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || ||||||||||| ||||| || || || || |
Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||||||
Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | || || ||||| ||| || ||||||||||| |||||||| |||
Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || ||||| || || ||||| ||||| || || | |
Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652
Query 283080 GTCTTAACGAATATCTGCAT 283099
|| || ||||| || |||||
Sbjct 4651 GTTTTGACGAAGATTTGCAT 4632
>seq26788
Length=2620
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | || || ||||| |||||| ||||||||||| |||||||| |||
Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || ||||| || || ||||| ||||| || || |
Sbjct 2188 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGC 2129
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||||||
Sbjct 2128 GTCTTGACGAAGATCTGCAT 2109
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | || || ||||| ||| || ||||||||||| |||||||| |||
Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || ||||| || || ||||| ||||| || || | |
Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845
Query 283080 GTCTTAACGAATATCTGCAT 283099
|| || ||||| || |||||
Sbjct 1844 GTTTTGACGAAGATTTGCAT 1825
>seq4181
Length=1006
Score = 104 bits (114), Expect = 5e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | || || ||||| ||| || ||||||||||| |||||||| |||
Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || ||||||||||| ||||| || || || || |
Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764
Query 283080 GTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||||||
Sbjct 763 GTCTTGACGAAGATCTGCAT 744
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| || ||||| | || || ||||| ||| || ||||||||||| |||||||| |||
Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| ||| | ||||| ||||| || ||||| || || ||||| ||||| || || | |
Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478
Query 283080 GTCTTAACGAATATCTGCAT 283099
|| || ||||| || |||||
Sbjct 477 GTTTTGACGAAGATTTGCAT 458
>seq29861
Length=4039
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034
|| |||||||| |||||| ||||||||||| |||||||| ||||| || | |||||
Sbjct 3861 CGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCATGGATCTTCGCTTTCACATTCTCGATG 3920
Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094
| ||| || |||||||| || ||||| ||||| || || | ||| || ||||| ||
Sbjct 3921 GGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGAGTTTTGACGAAAATT 3980
Query 283095 TG 283096
||
Sbjct 3981 TG 3982
>seq20723
Length=574
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034
|| |||||||| |||||| ||||||||||| |||||||| ||||| || | |||||
Sbjct 353 CGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTCACATTCTCGATG 294
Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094
| ||| || |||||||| || ||||| ||||| || || | ||| || ||||| ||
Sbjct 293 GGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGAGTTTTGACGAAAATT 234
Query 283095 TG 283096
||
Sbjct 233 TG 232
>seq30621
Length=4347
Score = 84.2 bits (92), Expect = 5e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 274671 GCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCCG 274730
|| || || || || ||||| ||||| |||||||| ||||| ||||| || || ||
Sbjct 1691 GCTTCCCGAACATTGAGCAATTTACCACGGAGAGGAAAAACTCCATAATAATCTCGACCA 1632
Query 274731 ATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAAA 274790
|| || || || |||| || | |||| || ||||||||||| |||||||||||
Sbjct 1631 ATCACTCCGAGTCCTGCGACAGCCAAAGTTTTGGCCGAATCTCCCTCGGTGAGAATCAAT 1572
Query 274791 GTACACAACTTACTGTTTTTTGTGCCTGC 274819
|| ||| ||| |||||| ||||| ||
Sbjct 1571 GTGCACCGCTTCGAGTTTTTCGTGCCAGC 1543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046273719003032
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