Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq25885 152 1e-31 seq28651 113 9e-20 seq30320 109 1e-18 seq10457 109 1e-18 seq33636 104 5e-17 seq26788 104 5e-17 seq4181 104 5e-17 seq29861 89.7 1e-12 seq20723 89.7 1e-12 seq30621 84.2 5e-11 >seq25885 Length=2931 Score = 152 bits (168), Expect = 1e-31 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | |||| || || || ||||||||||| || Sbjct 768 CCGCCCCGGAGACGGAGGACCAAGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCC 827 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| || || ||||| || ||||| ||||| ||||||| ||||| || || |||| Sbjct 828 AACGTTCGTCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGCCGTTGCTGATCCGGCGGA 887 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 | |||||||||||||||||||| | || || | || | |||||||| |||| || || Sbjct 888 ACGCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCCACAGTGTCCG-AGCTCTCCAC 946 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||| || |||||||| ||||| ||||| || ||||| Sbjct 947 CTCCAAAGTGATCGTTTTGCCCGTCAATGTCTTCACGAAAATTTGCAT 994 >seq28651 Length=4159 Score = 113 bits (124), Expect = 9e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || || ||||| | ||| |||||||| || || ||||||||||| |||||||| Sbjct 1842 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1783 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || | ||||| ||||| || || |||||||||||||||||||| || || Sbjct 1782 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGAGTGATCGTCTTGCCGGT 1723 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 | |||||| || || ||||||||| Sbjct 1722 GAGAGTCTTCACAAAGATCTGCATT 1698 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || || ||||| | ||| |||||||| || || ||||||||||| |||||||| Sbjct 1568 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1509 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || | ||||| ||||| || || |||||||| ||||||||||| || || Sbjct 1508 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1449 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 | |||||| || || ||||||||| Sbjct 1448 GAGAGTCTTCACAAAGATCTGCATT 1424 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||| || || ||||| | ||| |||||||| || || ||||||||||| |||||||| Sbjct 1294 TTTACCAGCGAAGATGAGACGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 1235 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || | ||||| ||||| || || |||||||| ||||||||||| || || Sbjct 1234 CGCCTTCACATTCTCGATGGTGTCGCTCGCCTCAACTTCGAGGGTGATCGTCTTGCCGGT 1175 Query 283076 CAAAGTCTTAACGAATATCTGCATT 283100 | ||||| || || || |||||| Sbjct 1174 GAGGGTCTTGACAAAGATTTGCATT 1150 >seq30320 Length=5461 Score = 109 bits (120), Expect = 1e-18 Identities = 115/150 (77%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 282951 AGTTGTT-TCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 ||||| | | || || ||||| | || || ||||| ||| || ||||||||||| || Sbjct 5230 AGTTGATGTACCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 5289 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||| ||||| ||| | ||||| ||||| || |||||||| |||||||| ||||| Sbjct 5290 GATCTTCGCTTTCACGTTCTCGATGGTGTCACTCGCCTCGACTTCAAGAGTGATGGTCTT 5349 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||| ||||| |||||||| Sbjct 5350 CCCGGTGAGCGTCTTGACGAAGATCTGCAT 5379 >seq10457 Length=1107 Score = 109 bits (120), Expect = 1e-18 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || || || |||| ||| || || || | ||||||||| Sbjct 727 CCGCCCCGTAGGCGCAGCACAAGGTGTACAGTGGCCTCCTTCTGCACACCGTAGTCAGCC 668 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| ||||| ||||| || ||||| |||||||| | ||| || || || ||| | ||| Sbjct 667 AACGTTCGGCCGTCCTCGAGCTGTTTGCCGGCAAAAACCAATCGCTGATGATCAGCGGGA 608 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || ||||||||||| |||||| || || | |||| | ||||| | ||| || || Sbjct 607 ATGCCCTCCTTGTCAGTGATCTTCCGCTTCACATTCTCGACACTGTCC-ATGCTGTCCAC 549 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| || || |||||||| || | ||| || |||||| Sbjct 548 CTCCAGCGTGATGACTTTGCCGGTCAAAGTTTTGATGAAAATTTGCATT 500 >seq33636 Length=8621 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | || || ||||| ||| || ||||||||||| |||||||| ||| Sbjct 5057 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4998 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||||||||| ||||| || || || || | Sbjct 4997 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 4938 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 4937 GTCTTGACGAAGATCTGCAT 4918 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | || || ||||| ||| || ||||||||||| |||||||| ||| Sbjct 4771 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 4712 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||| || || ||||| ||||| || || | | Sbjct 4711 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 4652 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 4651 GTTTTGACGAAGATTTGCAT 4632 >seq26788 Length=2620 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | || || ||||| |||||| ||||||||||| |||||||| ||| Sbjct 2248 CCAGCGAAGATAAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCT 2189 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||| || || ||||| ||||| || || | Sbjct 2188 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGC 2129 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 2128 GTCTTGACGAAGATCTGCAT 2109 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | || || ||||| ||| || ||||||||||| |||||||| ||| Sbjct 1964 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 1905 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||| || || ||||| ||||| || || | | Sbjct 1904 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 1845 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 1844 GTTTTGACGAAGATTTGCAT 1825 >seq4181 Length=1006 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | || || ||||| ||| || ||||||||||| |||||||| ||| Sbjct 883 CCAGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 824 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||||||||| ||||| || || || || | Sbjct 823 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACTTCGAGGGTGATGGTTTTCCCGGTGAGC 764 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 763 GTCTTGACGAAGATCTGCAT 744 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || || ||||| | || || ||||| ||| || ||||||||||| |||||||| ||| Sbjct 597 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCT 538 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||| || || ||||| ||||| || || | | Sbjct 537 TTCACGTTCTCGATGGTGTCGCTCGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGA 478 Query 283080 GTCTTAACGAATATCTGCAT 283099 || || ||||| || ||||| Sbjct 477 GTTTTGACGAAGATTTGCAT 458 >seq29861 Length=4039 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 || |||||||| |||||| ||||||||||| |||||||| ||||| || | ||||| Sbjct 3861 CGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCATGGATCTTCGCTTTCACATTCTCGATG 3920 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 | ||| || |||||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 3921 GGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGAGTTTTGACGAAAATT 3980 Query 283095 TG 283096 || Sbjct 3981 TG 3982 >seq20723 Length=574 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 || |||||||| |||||| ||||||||||| |||||||| ||||| || | ||||| Sbjct 353 CGCTGTTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCTTTCACATTCTCGATG 294 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 | ||| || |||||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 293 GGGTCGCTCGCCTCGACTTCAAGGGTGATGGTCTTCCCGGTGAGAGTTTTGACGAAAATT 234 Query 283095 TG 283096 || Sbjct 233 TG 232 >seq30621 Length=4347 Score = 84.2 bits (92), Expect = 5e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 274671 GCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCCG 274730 || || || || || ||||| ||||| |||||||| ||||| ||||| || || || Sbjct 1691 GCTTCCCGAACATTGAGCAATTTACCACGGAGAGGAAAAACTCCATAATAATCTCGACCA 1632 Query 274731 ATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAAA 274790 || || || || |||| || | |||| || ||||||||||| ||||||||||| Sbjct 1631 ATCACTCCGAGTCCTGCGACAGCCAAAGTTTTGGCCGAATCTCCCTCGGTGAGAATCAAT 1572 Query 274791 GTACACAACTTACTGTTTTTTGTGCCTGC 274819 || ||| ||| |||||| ||||| || Sbjct 1571 GTGCACCGCTTCGAGTTTTTCGTGCCAGC 1543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046273719003032