Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01]
34,708 sequences; 81,908,042 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq25885 136 1e-26
seq26788 127 5e-24
seq33636 123 6e-23
seq4181 123 6e-23
seq20723 114 3e-20
seq18571 113 1e-19
seq19842 109 1e-18
seq28651 107 5e-18
seq29861 105 2e-17
seq30320 98.7 2e-15
>seq25885
Length=2931
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || | || || ||||||||||| | |||||||| ||||| |||
Sbjct 991 CAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCGGAC 932
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| | || || || || ||||| || ||||| || || | || ||||| ||||||
Sbjct 931 ACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAGCAA 872
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| ||||||||||| || ||| | || | ||||| || ||| |
Sbjct 871 CGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAACATA 812
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 811 CAGAAGGAGTCCACGCTCCA-CTTG 788
>seq26788
Length=2620
Score = 127 bits (140), Expect = 5e-24
Identities = 113/140 (81%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980
||||| ||||| ||||||||||| || || || |||||||| ||||| || |||
Sbjct 1828 CAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC--- 1884
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||||| ||| ||||| |||||||| || || ||||| |||||||||
Sbjct 1885 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1944
Query 178041 CAACGACTTATCTTCGCCGG 178060
|| || ||||||||||| ||
Sbjct 1945 CAGCGCCTTATCTTCGCTGG 1964
Score = 105 bits (116), Expect = 2e-17
Identities = 108/140 (77%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || ||||| || || ||||| || || || |||||||| ||||| || |||
Sbjct 2112 CAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC--- 2168
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||||| ||| ||||| |||||||| || || || || || ||||||
Sbjct 2169 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 2228
Query 178041 CAACGACTTATCTTCGCCGG 178060
|| || ||||||||||| ||
Sbjct 2229 CAGCGCCTTATCTTCGCTGG 2248
>seq33636
Length=8621
Score = 123 bits (136), Expect = 6e-23
Identities = 112/140 (80%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980
||||| ||||| ||||||||||| || || || |||||||| ||||| || |||
Sbjct 4635 CAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC--- 4691
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||||| ||| ||||| |||||||| || || ||||| |||||||||
Sbjct 4692 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 4751
Query 178041 CAACGACTTATCTTCGCCGG 178060
|| || || |||||||| ||
Sbjct 4752 CAGCGCCTCATCTTCGCTGG 4771
Score = 118 bits (130), Expect = 3e-21
Identities = 111/140 (79%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980
|| || ||||| || || ||||| || ||||| ||||||||||| || || |||
Sbjct 4921 CAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC--- 4977
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||||| ||| ||||| |||||||| || || ||||| |||||||||
Sbjct 4978 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5037
Query 178041 CAACGACTTATCTTCGCCGG 178060
|| || ||||||||||| ||
Sbjct 5038 CAGCGCCTTATCTTCGCTGG 5057
>seq4181
Length=1006
Score = 123 bits (136), Expect = 6e-23
Identities = 112/140 (80%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980
||||| ||||| ||||||||||| || || || |||||||| ||||| || |||
Sbjct 461 CAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC--- 517
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||||| ||| ||||| |||||||| || || ||||| |||||||||
Sbjct 518 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 577
Query 178041 CAACGACTTATCTTCGCCGG 178060
|| || || |||||||| ||
Sbjct 578 CAGCGCCTCATCTTCGCTGG 597
Score = 118 bits (130), Expect = 3e-21
Identities = 111/140 (79%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980
|| || ||||| || || ||||| || ||||| ||||||||||| || || |||
Sbjct 747 CAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC--- 803
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||||| ||| ||||| |||||||| || || ||||| |||||||||
Sbjct 804 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 863
Query 178041 CAACGACTTATCTTCGCCGG 178060
|| || ||||||||||| ||
Sbjct 864 CAGCGCCTTATCTTCGCTGG 883
>seq20723
Length=574
Score = 114 bits (126), Expect = 3e-20
Identities = 116/150 (77%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT--- 177970
|| |||| ||||||||||||| ||||||||||| || || || |||||||| || ||
Sbjct 222 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 281
Query 177971 GGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030
|| ||| ||| |||||||||| || ||| ||||| |||||||| || ||||| ||
Sbjct 282 GGCGAGC---GACCCCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGAATTCC 338
Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGG 178060
|||||||| || || || || ||||| ||
Sbjct 339 GCCGGACCAACAGCGCCTCATTTTCGCGGG 368
>seq18571
Length=770
Score = 113 bits (124), Expect = 1e-19
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973
|| |||| ||||||||||||| ||||||||||| || || || |||||||| || || ||
Sbjct 430 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 489
Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033
|||||||||||||| || ||| ||||| |||||||| | ||||| || ||
Sbjct 490 GGCGAGTGACACCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGCAGGGAATTCCGCC 549
Query 178034 GGACCAGCAACGACTTATCTTCGCCGG 178060
|||||| || || || || ||||| ||
Sbjct 550 GGACCAACAGCGCCTCATTTTCGCTGG 576
>seq19842
Length=1839
Score = 109 bits (120), Expect = 1e-18
Identities = 115/150 (77%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT--- 177970
|| |||| ||||||||||||| ||||||||||| || || || |||||||| || ||
Sbjct 1639 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 1580
Query 177971 GGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030
|| ||| ||| |||||||||| || ||| ||||| |||| ||| || ||||| ||
Sbjct 1579 GGCGAGC---GACCCCATCGAGAATGTGAAAGCGAAGATCCAGGGCAAGGAGGGAATTCC 1523
Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGG 178060
|||||||| || || || || ||||| ||
Sbjct 1522 GCCGGACCAACAGCGCCTCATTTTCGCGGG 1493
>seq28651
Length=4159
Score = 107 bits (118), Expect = 5e-18
Identities = 111/144 (77%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980
|| || || ||||| |||||||| || || |||||||||||||| || || |||
Sbjct 1428 CAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC--- 1484
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|||||||||||||| || || ||||| |||||||| || || ||||| ||||||||
Sbjct 1485 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1544
Query 178041 CAACGACTTATCTTCGCCGGAAAA 178064
|| || || |||||||| || |||
Sbjct 1545 CAGCGTCTCATCTTCGCTGGTAAA 1568
Score = 104 bits (114), Expect = 6e-17
Identities = 110/144 (76%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980
||||| || || || || ||||| || || |||||||||||||| || || |||
Sbjct 1154 CAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC--- 1210
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|||||||||||||| || || ||||| |||||||| || || ||||| ||||||||
Sbjct 1211 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1270
Query 178041 CAACGACTTATCTTCGCCGGAAAA 178064
|| || || |||||||| || |||
Sbjct 1271 CAGCGTCTCATCTTCGCTGGTAAA 1294
Score = 104 bits (114), Expect = 6e-17
Identities = 110/144 (76%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || || ||||| |||||||| || || |||||||| ||||| || || |||
Sbjct 1702 CAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAGC--- 1758
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|||||||||||||| || || ||||| |||||||| || || ||||| ||||||||
Sbjct 1759 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1818
Query 178041 CAACGACTTATCTTCGCCGGAAAA 178064
|| || || |||||||| || |||
Sbjct 1819 CAGCGTCTCATCTTCGCTGGTAAA 1842
>seq29861
Length=4039
Score = 105 bits (116), Expect = 2e-17
Identities = 114/150 (76%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT--- 177970
|| |||| ||||||||||||| ||||||||||| || || || |||||||| || ||
Sbjct 3992 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 3933
Query 177971 GGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030
|| ||| ||| |||||||||| || ||| ||||| || ||||| || ||||| ||
Sbjct 3932 GGCGAGC---GACCCCATCGAGAATGTGAAAGCGAAGATCCATGACAAGGAGGGAATTCC 3876
Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGG 178060
|||||||| || || | || ||||| ||
Sbjct 3875 GCCGGACCAACAGCGCATCATTTTCGCGGG 3846
>seq30320
Length=5461
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||| || || || || |||
Sbjct 5376 CAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACTCTTGAAGTCGAGGCGAGTGAC 5317
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| ||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 5316 ACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 5257
Query 178044 CGACTTATCTTCGCCGG 178060
|| || |||||||| ||
Sbjct 5256 CGCCTCATCTTCGCTGG 5240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203195905249352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |