Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterodera_20glycines_20[genbank_20GCA_5F000150805.1_202008-04-01] 34,708 sequences; 81,908,042 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25885 136 1e-26 seq26788 127 5e-24 seq33636 123 6e-23 seq4181 123 6e-23 seq20723 114 3e-20 seq18571 113 1e-19 seq19842 109 1e-18 seq28651 107 5e-18 seq29861 105 2e-17 seq30320 98.7 2e-15 >seq25885 Length=2931 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || || ||||||||||| | |||||||| ||||| ||| Sbjct 991 CAAATTTTCGTGAAGACATTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGCTCGGAC 932 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| || ||||| || || | || ||||| |||||| Sbjct 931 ACTGTGGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGCGTTCCGCCGGATCAGCAA 872 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| ||||||||||| || ||| | || | ||||| || ||| | Sbjct 871 CGGCTGATCTTCGCCGGCAAACAGCTCGAGGACGGACGAACGTTGGCCGACTACAACATA 812 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 811 CAGAAGGAGTCCACGCTCCA-CTTG 788 >seq26788 Length=2620 Score = 127 bits (140), Expect = 5e-24 Identities = 113/140 (81%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980 ||||| ||||| ||||||||||| || || || |||||||| ||||| || ||| Sbjct 1828 CAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC--- 1884 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| ||| ||||| |||||||| || || ||||| ||||||||| Sbjct 1885 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1944 Query 178041 CAACGACTTATCTTCGCCGG 178060 || || ||||||||||| || Sbjct 1945 CAGCGCCTTATCTTCGCTGG 1964 Score = 105 bits (116), Expect = 2e-17 Identities = 108/140 (77%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || || ||||| || || || |||||||| ||||| || ||| Sbjct 2112 CAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC--- 2168 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| ||| ||||| |||||||| || || || || || |||||| Sbjct 2169 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 2228 Query 178041 CAACGACTTATCTTCGCCGG 178060 || || ||||||||||| || Sbjct 2229 CAGCGCCTTATCTTCGCTGG 2248 >seq33636 Length=8621 Score = 123 bits (136), Expect = 6e-23 Identities = 112/140 (80%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980 ||||| ||||| ||||||||||| || || || |||||||| ||||| || ||| Sbjct 4635 CAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC--- 4691 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| ||| ||||| |||||||| || || ||||| ||||||||| Sbjct 4692 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 4751 Query 178041 CAACGACTTATCTTCGCCGG 178060 || || || |||||||| || Sbjct 4752 CAGCGCCTCATCTTCGCTGG 4771 Score = 118 bits (130), Expect = 3e-21 Identities = 111/140 (79%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980 || || ||||| || || ||||| || ||||| ||||||||||| || || ||| Sbjct 4921 CAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC--- 4977 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| ||| ||||| |||||||| || || ||||| ||||||||| Sbjct 4978 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 5037 Query 178041 CAACGACTTATCTTCGCCGG 178060 || || ||||||||||| || Sbjct 5038 CAGCGCCTTATCTTCGCTGG 5057 >seq4181 Length=1006 Score = 123 bits (136), Expect = 6e-23 Identities = 112/140 (80%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980 ||||| ||||| ||||||||||| || || || |||||||| ||||| || ||| Sbjct 461 CAAATCTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAGGTCGAGGCGAGC--- 517 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| ||| ||||| |||||||| || || ||||| ||||||||| Sbjct 518 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 577 Query 178041 CAACGACTTATCTTCGCCGG 178060 || || || |||||||| || Sbjct 578 CAGCGCCTCATCTTCGCTGG 597 Score = 118 bits (130), Expect = 3e-21 Identities = 111/140 (79%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980 || || ||||| || || ||||| || ||||| ||||||||||| || || ||| Sbjct 747 CAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACCCTCGAAGTCGAGGCGAGC--- 803 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||| ||| ||||| |||||||| || || ||||| ||||||||| Sbjct 804 GACACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 863 Query 178041 CAACGACTTATCTTCGCCGG 178060 || || ||||||||||| || Sbjct 864 CAGCGCCTTATCTTCGCTGG 883 >seq20723 Length=574 Score = 114 bits (126), Expect = 3e-20 Identities = 116/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT--- 177970 || |||| ||||||||||||| ||||||||||| || || || |||||||| || || Sbjct 222 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 281 Query 177971 GGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 || ||| ||| |||||||||| || ||| ||||| |||||||| || ||||| || Sbjct 282 GGCGAGC---GACCCCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGAATTCC 338 Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGG 178060 |||||||| || || || || ||||| || Sbjct 339 GCCGGACCAACAGCGCCTCATTTTCGCGGG 368 >seq18571 Length=770 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973 || |||| ||||||||||||| ||||||||||| || || || |||||||| || || || Sbjct 430 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 489 Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 |||||||||||||| || ||| ||||| |||||||| | ||||| || || Sbjct 490 GGCGAGTGACACCATCGAGAATGTGAAAGCGAAGATCCAGGACAAGCAGGGAATTCCGCC 549 Query 178034 GGACCAGCAACGACTTATCTTCGCCGG 178060 |||||| || || || || ||||| || Sbjct 550 GGACCAACAGCGCCTCATTTTCGCTGG 576 >seq19842 Length=1839 Score = 109 bits (120), Expect = 1e-18 Identities = 115/150 (77%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT--- 177970 || |||| ||||||||||||| ||||||||||| || || || |||||||| || || Sbjct 1639 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 1580 Query 177971 GGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 || ||| ||| |||||||||| || ||| ||||| |||| ||| || ||||| || Sbjct 1579 GGCGAGC---GACCCCATCGAGAATGTGAAAGCGAAGATCCAGGGCAAGGAGGGAATTCC 1523 Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGG 178060 |||||||| || || || || ||||| || Sbjct 1522 GCCGGACCAACAGCGCCTCATTTTCGCGGG 1493 >seq28651 Length=4159 Score = 107 bits (118), Expect = 5e-18 Identities = 111/144 (77%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980 || || || ||||| |||||||| || || |||||||||||||| || || ||| Sbjct 1428 CAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC--- 1484 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| || || ||||| |||||||| || || ||||| |||||||| Sbjct 1485 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1544 Query 178041 CAACGACTTATCTTCGCCGGAAAA 178064 || || || |||||||| || ||| Sbjct 1545 CAGCGTCTCATCTTCGCTGGTAAA 1568 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT---GGAAAGCTCA 177980 ||||| || || || || ||||| || || |||||||||||||| || || ||| Sbjct 1154 CAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAAGTTGAGGCGAGC--- 1210 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| || || ||||| |||||||| || || ||||| |||||||| Sbjct 1211 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1270 Query 178041 CAACGACTTATCTTCGCCGGAAAA 178064 || || || |||||||| || ||| Sbjct 1271 CAGCGTCTCATCTTCGCTGGTAAA 1294 Score = 104 bits (114), Expect = 6e-17 Identities = 110/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || ||||| |||||||| || || |||||||| ||||| || || ||| Sbjct 1702 CAGATCTTTGTGAAGACTCTCACCGGCAAGACGATCACTCTCGAAGTTGAGGCGAGC--- 1758 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| || || ||||| |||||||| || || ||||| |||||||| Sbjct 1759 GACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAA 1818 Query 178041 CAACGACTTATCTTCGCCGGAAAA 178064 || || || |||||||| || ||| Sbjct 1819 CAGCGTCTCATCTTCGCTGGTAAA 1842 >seq29861 Length=4039 Score = 105 bits (116), Expect = 2e-17 Identities = 114/150 (76%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGT--- 177970 || |||| ||||||||||||| ||||||||||| || || || |||||||| || || Sbjct 3992 TATAATGTTCCAAATTTTCGTCAAAACTCTCACCGGGAAGACCATCACCCTTGAAGTCGA 3933 Query 177971 GGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 || ||| ||| |||||||||| || ||| ||||| || ||||| || ||||| || Sbjct 3932 GGCGAGC---GACCCCATCGAGAATGTGAAAGCGAAGATCCATGACAAGGAGGGAATTCC 3876 Query 178031 TCCGGACCAGCAACGACTTATCTTCGCCGG 178060 |||||||| || || | || ||||| || Sbjct 3875 GCCGGACCAACAGCGCATCATTTTCGCGGG 3846 >seq30320 Length=5461 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| || || || || ||| Sbjct 5376 CAGATCTTCGTCAAGACGCTCACCGGGAAGACCATCACTCTTGAAGTCGAGGCGAGTGAC 5317 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 5316 ACCATCGAGAACGTGAAAGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 5257 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 5256 CGCCTCATCTTCGCTGG 5240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203195905249352