Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterorhabditis_20bacteriophora_20[genbank_20GCA_5F000223415.1_20201 1-08-22] 1,240 sequences; 76,974,349 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq870 89.7 5e-13 seq1149 86.0 6e-12 >seq870 Length=43228 Score = 89.7 bits (98), Expect = 5e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| | || |||||||| ||||| || || || ||||||||||| ||| | || Sbjct 18098 TTACCAGCGAAAATGAGACGTTGTTGATCAGGCGGAATTCCTTCTTTGTC-TTGAATCTT 18156 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||||| | || | ||| || | | |||||| |||| || | |||||| || || Sbjct 18157 AGCTTTTACGTTCTCGATTGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTCCCAGT 18216 Query 139741 CAACGTTTTTACGAATATTTGCATAGCT 139768 | |||||||||||||| |||||| || Sbjct 18217 AAGGGTTTTTACGAATATCTGCATACCT 18244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 |||||| | || |||||||| ||||| || || || ||||||||||| ||| | || | Sbjct 18454 ACCAGCGAAAATGAGACGTTGTTGATCAGGCGGAATTCCTTCTTTGTC-TTGAATCTTAG 18512 Query 139684 -TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||||| | || | ||| || | | |||||| |||| || | ||| || || || | Sbjct 18513 CTTTTACATTATCGATTGTATCAGAAGCCTCCACTTCAAGAGTGATCGTTTTACCAGTAA 18572 Query 139743 ACGTTTTTACGAATATTTGCATA 139765 ||||||||||||||||||||| Sbjct 18573 GGGTTTTTACGAATATTTGCATA 18595 >seq1149 Length=232818 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| ||| |||||||||| || ||||| ||||| ||||||||||| || ||| || Sbjct 43490 TACCTGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTAG 43431 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||| | | ||| | || || ||||||| ||||||| ||| | ||||| || || | Sbjct 43430 CTTTAACATTTTCGATAGTATCAATGGGCTCTACCTCAAGGGTAATAGTCTTACCAGTGA 43371 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 || || || || |||||||| Sbjct 43370 GAGTCTTCACAAAAATTTGCAT 43349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496056311008000