Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterorhabditis_20bacteriophora_20[genbank_20GCA_5F000223415.1_20201 1-08-22] 1,240 sequences; 76,974,349 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1149 136 9e-27 seq870 123 6e-23 seq971 105 2e-17 seq823 104 5e-17 >seq1149 Length=232818 Score = 136 bits (150), Expect = 9e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | ||||||||||||||| || ||||||||||| || ||||| ||| Sbjct 43488 CCTGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTAGCT 43429 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| | || |||||||| || ||||||||||||||||| || Sbjct 43428 TTAACATTTTCGATAGTATCAATGGGCTCTACCTCAAGGGTAATAGTCTTACCAGTGAGA 43369 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| Sbjct 43368 GTCTTCACAAAAATTTGCAT 43349 >seq870 Length=43228 Score = 123 bits (136), Expect = 6e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| ||||| || | ||||||||||| || ||||||||||| || |||||||| Sbjct 18098 TTACCAGCGAAAATGAGACGTTGTTGATCAGGCGGAATTCCTTCTTTGTCTTGAATCTTA 18157 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||||||| || || | ||||| || || || || || || || ||||| |||||| Sbjct 18158 GCTTTTACGTTCTCGATTGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTCCCAGTA 18217 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || |||||||| ||||||||||| Sbjct 18218 AGGGTTTTTACGAATATCTGCAT 18240 Score = 123 bits (136), Expect = 6e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| ||||| || | ||||||||||| || ||||||||||| || |||||||| ||| Sbjct 18455 CCAGCGAAAATGAGACGTTGTTGATCAGGCGGAATTCCTTCTTTGTCTTGAATCTTAGCT 18514 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | ||||| || || || || || || || || ||||||||||| Sbjct 18515 TTTACATTATCGATTGTATCAGAAGCCTCCACTTCAAGAGTGATCGTTTTACCAGTAAGG 18574 Query 104540 GTTTTTACAAATATCTGCATTTT 104562 |||||||| ||||| ||||| || Sbjct 18575 GTTTTTACGAATATTTGCATATT 18597 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||||| ||| | ||||| ||||||||||||||||||||||| || || | ||| || Sbjct 17941 AAGTACTAAATGAAGAGTAGACTCTTTCTGAATATTATAGTCAGAAAGTGTGCGACCATC 18000 Query 104407 TTCTAGTTGTTTTCC 104421 ||| ||||||||||| Sbjct 18001 TTCAAGTTGTTTTCC 18015 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| ||||| | ||| ||||| || ||||||||||||||||| ||||||| ||| || Sbjct 18256 AAGTACAAGATGAAGTGTCGATTCCTTTTGAATATTATAGTCAGAAAGAGTTCGACCATC 18315 Query 104407 TTCTAGTTGTTTTCC 104421 |||| ||||||||| Sbjct 18316 CTCTAATTGTTTTCC 18330 >seq971 Length=50814 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||| |||||||| || ||||| || |||||||| ||||| ||| Sbjct 50507 CCAGCAAAAATCAGACGCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTCGCT 50448 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | || ||| | ||| ||||| || || || || || || || || Sbjct 50447 TTTACATTCTCAATAGTGTCGGAGGCTTCAACCTCAAGAGTGATCGTTTTGCCGGTGAGC 50388 Query 104540 GTTTTTACAAATATCTGCATT 104560 || ||||| |||| |||||| Sbjct 50387 GTCTTTACGAATACTTGCATT 50367 >seq823 Length=9300 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||| |||||||| || ||||| || |||||||| ||||| ||| Sbjct 8194 CCAGCAAAAATCAGACGCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTCGCT 8253 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | || ||| | ||| ||||| || || || || || || || || Sbjct 8254 TTTACATTCTCAATAGTGTCGGAGGCTTCAACCTCAAGAGTGATCGTTTTGCCGGTGAGC 8313 Query 104540 GTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| Sbjct 8314 GTCTTTACGAAGATTTGCAT 8333 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||| |||||||| || ||||| || |||||||| ||||| ||| Sbjct 8508 CCAGCAAAAATCAGACGCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTCGCT 8567 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | || ||| | ||| ||||| || || || || || || || || Sbjct 8568 TTTACATTCTCAATAGTGTCGGAGGCTTCAACCTCAAGAGTGATCGTTTTGCCGGTGAGC 8627 Query 104540 GTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| Sbjct 8628 GTCTTTACGAAGATTTGCAT 8647 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||| |||||||| || ||||| || |||||||| ||||| ||| Sbjct 8821 CCAGCAAAAATCAGACGCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTCGCT 8880 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | || ||| | ||| ||||| || || || || || || || || Sbjct 8881 TTTACATTCTCAATAGTGTCGGAGGCTTCAACCTCAAGAGTGATCGTTTTGCCGGTGAGC 8940 Query 104540 GTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| Sbjct 8941 GTCTTTACGAAGATTTGCAT 8960 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||| |||||||| || ||||| || |||||||| ||||| ||| Sbjct 9135 CCAGCAAAAATCAGACGCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTCGCT 9194 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | || ||| | ||| ||||| || || || || || || || || Sbjct 9195 TTTACATTCTCAATAGTGTCGGAGGCTTCAACCTCAAGAGTGATCGTTTTGCCGGTGAGC 9254 Query 104540 GTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| Sbjct 9255 GTCTTTACGAAGATTTGCAT 9274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151380107157920