Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterorhabditis_20bacteriophora_20[genbank_20GCA_5F000223415.1_20201 1-08-22] 1,240 sequences; 76,974,349 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq660 123 5e-24 seq1126 95.1 2e-15 seq1180 87.8 4e-13 seq1055 86.0 1e-12 >seq660 Length=4054 Score = 123 bits (136), Expect = 5e-24 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 ||||||||||||||||| ||||| |||| ||| ||| |||| |||||| | || || Sbjct 3222 GATAAAAATAATTATGTAATTCATTATAGAAACCTGATACAAGCTTTAGAACTTGGATT- 3164 Query 4531 GTTCTTA-AGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATA 4589 | ||| ||||||| | | | | ||||| || |||| | ||||| | |||| Sbjct 3163 GAAATTAGAGAAAATTAATAGAATTATAAAATTCGATGAATCTAATTGGCTTGCACCATA 3104 Query 4590 TATCGATAAAAATACCGCA-TGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaC---T 4645 ||| ||| ||||| | | ||||| | ||| |||||||| |||||||| | Sbjct 3103 TATTGATCTGAATACTAATCTACGGAAAAAGTG-TAAAAATGAGTTTGAAAAAAAAGATT 3045 Query 4646 TTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700 | ||||| |||||||||||| | |||||||| |||||||||||||||||||| || Sbjct 3044 TCTATAAGTTAATGAATAATTCAGTTTTTGGTAAGACGATGGAGAATGTACGTAA 2990 >seq1126 Length=314434 Score = 95.1 bits (104), Expect = 2e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 ||||| || |||||||| ||||| ||| |||| | |||| ||||| | || | Sbjct 309165 GATAAGAACAATTATGTAATTCATTATCAAAACCTACTACAAGCACTAGATCTTGGAATG 309224 Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590 | |||||||| | |||||||| |||||| | || ||||| || || Sbjct 309225 AAATTGAAGAAAATCAAAAGAGTCTTGACATTTGATGAGAGTGATTGGCTTGCTTCTTAC 309284 Query 4591 ATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTAT 4650 || ||| |||||| || ||| |||||| ||||| ||||||||| | || | Sbjct 309285 ATTGATCTAAATACTAATCTTCGTAAAAAAGCTAAAAATGATTTCGAAAAAGATTTCTTC 309344 Query 4651 AAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700 ||| | ||||||||| | |||||||| ||||| ||||||||||| || || Sbjct 309345 AAACTTATGAATAATTCTGTTTTTGGTAAGACAATGGAGAATGTTCGCAA 309394 >seq1180 Length=764111 Score = 87.8 bits (96), Expect = 4e-13 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 4613 GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTT 4672 ||||| |||||| ||||| ||||| ||| |||| | |||||| | |||||||| |||| Sbjct 418896 GAAAAAAAGCTAAAAATGATTTCGAGAAAGACTTCTTTAAATTGAGGAATAATGTAGTTT 418955 Query 4673 TTGGAAAGACGATGGAGAATGTACGAAA 4700 ||||||| |||||||| ||| | ||||| Sbjct 418956 TTGGAAAAACGATGGAAAATATCCGAAA 418983 >seq1055 Length=417600 Score = 86.0 bits (94), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAAT----TTGAAACAATGTTTAGATTTAGG 4526 |||||| | || ||||||||||||||||||||| || |||| |||| || | || Sbjct 416161 GATAAAGAAAAATATGTTATTCACTATAAAAATCTACTTCAAACT---TTTAAATAT-GG 416216 Query 4527 TTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATC 4586 |||| | || ||| | || | | | |||| |||||| || | ||| | || Sbjct 416217 TTTAAAATTGAAAAAAGTGCATCGAATTTTGACATTTGAAGAAAGTAATTGGATGCCTTC 416276 Query 4587 ATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTT 4646 || || || |||||| |||||| |||||||||||| ||||| ||| | || Sbjct 416277 GTACATTGAATTAAATACAAATCTACGAAAATCAGCTAAGAATGATTTCGAGAAAGATTT 416336 Query 4647 TTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACG 4697 || ||| | ||||||||| | || ||||| | || ||||| ||||| || Sbjct 416337 TTTCAAACTGATGAATAATTCTGTATTTGGTGAAACAATGGAAAATGTGCG 416387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97972957326960