Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterorhabditis_20bacteriophora_20[genbank_20GCA_5F000223415.1_20201 1-08-22] 1,240 sequences; 76,974,349 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1221 89.7 7e-13 >seq1221 Length=1649993 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 |||| || || || ||||| || ||||||||||| || || || |||||||| ||||| Sbjct 885693 GTTTTCTTATGAAGGTTTGAAACCGCTATTCTAGCAGCAAGTATAGCATAATCTGGATGC 885752 Query 63887 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACA 63946 || || || | |||||| |||| || |||| | |||||| |||||| |||| || Sbjct 885753 TGAGTGGTCATTGAAGCTGCTGTTTCTGCAGCCAAATTGTCCAGTTCTACAGTTGAAACT 885812 Query 63947 CCATTATATATTCCTTGGATAACCTTC 63973 || || || | ||| | ||||| ||| Sbjct 885813 CCTTTGTACAGTCCACGAATAACTTTC 885839 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 |||| || || || ||||| || ||||||||||| || || || |||||||| ||||| Sbjct 887050 GTTTTCTTATGAAGGTTTGAAACCGCTATTCTAGCAGCAAGTATAGCATAATCTGGATGC 886991 Query 63887 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACA 63946 || || || | |||||| |||| || |||| | |||||| |||||| |||| || Sbjct 886990 TGAGTGGTCATTGAAGCTGCTGTTTCTGCAGCCAAATTGTCCAGTTCTACAGTTGAAACT 886931 Query 63947 CCATTATATATTCCTTGGATAACCTTC 63973 || || || | ||| | ||||| ||| Sbjct 886930 CCTTTGTACAGTCCACGAATAACTTTC 886904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 62204 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 62263 || || ||||| | ||| | || |||||| ||| || || || | |||||| || ||| Sbjct 883079 CCGGATAATACGCGTCGACTATAGATATTAGAGGTGTATGGCTCAATAGACTCGTTGTTT 883138 Query 62264 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62323 || | |||||| ||||| || ||||||||||| || || | |||| |||||||| | | Sbjct 883139 CCAAGAATTTGTGCAGTGGAAGCAGTCGGCATTGGAGCAATTAATAGACTATTTCGCACA 883198 Query 62324 CCGTAT 62329 |||||| Sbjct 883199 CCGTAT 883204 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 62452 CTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTT 62511 || |||||| ||||||||| || || || ||| |||||||||| || || || || Sbjct 883448 CTCCTCAGCCAGTTCACAAGATGCTTCCAAGGCAGCGTAATAAATTGTCTCAAAAATTCG 883507 Query 62512 CTTATTTAGATCTTGCGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGAATAAACGCGT 62570 |||||||||||| | |||| |||| || ||| || || | || ||||| || | Sbjct 883508 CTTATTTAGATCACGAGCTT-CAGGAGATGTAAACGGGTATCGCATAAGCATAAATGCAT 883566 Query 62571 CTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA--GATTTCAGC 62628 | || || || |||||||| | || ||||| || || | |||| || || | || Sbjct 883567 CCGCCAACCCCTGAACACCCAATCCAATAGGCCTGTGACGAGTATTTGAACGACGT--GC 883624 Query 62629 TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 |||| || || || || || ||||| || ||||| || ||||| Sbjct 883625 TTCTTCAACTGGGTAGTAGTTGATATCAATTATTTTGTTTAGATT 883669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 62452 CTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTT 62511 || |||||| ||||||||| || || || ||| |||||||||| || || || || Sbjct 889295 CTCCTCAGCCAGTTCACAAGATGCTTCCAAGGCAGCGTAATAAATTGTCTCAAAAATTCG 889236 Query 62512 CTTATTTAGATCTTGCGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGAATAAACGCGT 62570 |||||||||||| | |||| |||| || ||| || || | || ||||| || | Sbjct 889235 CTTATTTAGATCACGAGCTT-CAGGAGATGTAAACGGGTATCGCATAAGCATAAATGCAT 889177 Query 62571 CTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA--GATTTCAGC 62628 | || || || |||||||| | || ||||| || || | |||| || || | || Sbjct 889176 CCGCCAACCCCTGAACACCCAATCCAATAGGCCTGTGACGAGTATTTGAACGACGT--GC 889119 Query 62629 TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 |||| || || || || || ||||| || ||||| || ||||| Sbjct 889118 TTCTTCAACTGGGTAGTAGTTGATATCAATTATTTTGTTTAGATT 889074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 62204 CCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTT 62263 || || ||||| | ||| | || |||||| ||| || || || | |||||| || ||| Sbjct 889664 CCGGATAATACGCGTCGACTATAGATATTAGAGGTGTATGGCTCAATAGACTCGTTGTTT 889605 Query 62264 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGA 62323 || | |||||| ||||| || ||||||||||| || || | |||| |||||||| | | Sbjct 889604 CCAAGAATTTGTGCAGTGGAAGCAGTCGGCATTGGAGCAATTAATAGACTATTTCGCACA 889545 Query 62324 CCGTAT 62329 |||||| Sbjct 889544 CCGTAT 889539 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| | ||||||||| | || |||||||||||||| |||||||| | || Sbjct 884236 TCGAATTTCTCTCCCCAACAGTCTTCTAGTCCAGGACATTCGCGTGGACACATGAGACAC 884295 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || ||| |||| || |||| ||||||||||||||| |||||||| | || |||| Sbjct 884296 CAATCTTGGTCACGCTCAACTCTTTTCATAAAGAGATCGGGAATCCACAAGGCATAAAAT 884355 Query 63113 AGATC 63117 ||||| Sbjct 884356 AGATC 884360 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| | ||||||||| | || |||||||||||||| |||||||| | || Sbjct 888507 TCGAATTTCTCTCCCCAACAGTCTTCTAGTCCAGGACATTCGCGTGGACACATGAGACAC 888448 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || ||| |||| || |||| ||||||||||||||| |||||||| | || |||| Sbjct 888447 CAATCTTGGTCACGCTCAACTCTTTTCATAAAGAGATCGGGAATCCACAAGGCATAAAAT 888388 Query 63113 AGATC 63117 ||||| Sbjct 888387 AGATC 888383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622178704000