Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterorhabditis_20bacteriophora_20[genbank_20GCA_5F000223415.1_20201 1-08-22] 1,240 sequences; 76,974,349 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq870 120 5e-22 seq1149 100 5e-16 >seq870 Length=43228 Score = 120 bits (132), Expect = 5e-22 Identities = 115/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || || ||||| | | ||||||||||| || ||||||||||| ||||| || || | | Sbjct 18455 CCAGCGAAAATGAGACGTTGTTGATCAGGCGGAATTCCTTCTTTGTCTTGAATCTTAGCT 18514 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| |||| ||| ||||| ||||| || |||||||| || || Sbjct 18515 TTTACATTATCGATTGTATCAGAAGCCTCCACTTCAAGAGTGATCGTTTTACCAGTAAGG 18574 Query 193341 GTTTTTACAAATATTTGCAT-TTTAT 193365 |||||||| ||||||||||| ||||| Sbjct 18575 GTTTTTACGAATATTTGCATATTTAT 18600 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| | | ||||||||||| || ||||||||||| ||||| || || Sbjct 18098 TTACCAGCGAAAATGAGACGTTGTTGATCAGGCGGAATTCCTTCTTTGTCTTGAATCTTA 18157 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||||| || || ||||| |||| ||| ||||| ||||| || || || || || Sbjct 18158 GCTTTTACGTTCTCGATTGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTCCCAGTA 18217 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 || |||||||| ||||| ||||| Sbjct 18218 AGGGTTTTTACGAATATCTGCAT 18240 >seq1149 Length=232818 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || | | ||||||||||||||| || |||||||||||||| || || | | Sbjct 43488 CCTGCAAAGATCAGACGCTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTAGCT 43429 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| |||||||| | ||| || || || || ||||| ||||| || || Sbjct 43428 TTAACATTTTCGATAGTATCAATGGGCTCTACCTCAAGGGTAATAGTCTTACCAGTGAGA 43369 Query 193341 GTTTTTACAAATATTTGCAT 193360 || || ||||| |||||||| Sbjct 43368 GTCTTCACAAAAATTTGCAT 43349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899640455356800