Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 134 3e-26 seq67 122 2e-22 seq13 107 4e-18 >seq2 Length=1259180 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || |||||||| || || || |||| || | |||||| Sbjct 897875 AAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACCGTC 897934 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || ||||||||||| || || ||||| ||||| || || || ||||| || || Sbjct 897935 CTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTTGTC 897994 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || |||||||| ||||| || | ||||| || ||||| || | || || || Sbjct 897995 TTGGATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTACTTCCAAAGTTATGGT 898054 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| || | |||||||| || || |||||| Sbjct 898055 CTTACCCGTCAAAGTTTTTACGAAAATTTGCATT 898088 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || ||||| || | ||| || |||||||| || |||||||||||||| || || || Sbjct 898296 CCTGCGAAAATGAGTCGCTGCTGGTCAGGAGGGATACCTTCTTTATCCTGGATTTTGGCC 898355 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| | || ||||| ||||| ||||| || ||||||||| Sbjct 898356 TTTACATTTTCGATCGTATCCGACGCCTCCACCTCCAGTGTTATAGTTTTGCCAGTAAGT 898415 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| Sbjct 898416 GTTTTAACAAAAATCTGCAT 898435 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| ||||| | ||||||||| || || || || ||||||||||| || || || Sbjct 899054 CCGGCAAAGATTAGTCGCTGTTGATCTGGTGGGATCCCCTCTTTATCCTGGATTTTCGCC 899113 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | || || | ||| ||||| ||||||||||| ||||||||||| Sbjct 899114 TTAACATTCTCGATCGTGTCAGATGCTTCCACCTCCAGTGTAATAGTTTTACCAGTAAGA 899173 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| Sbjct 899174 GTTTTAACGAAAATCTGCAT 899193 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| ||||| || | ||| |||||||| || ||||||||||||||||||||||| || Sbjct 898667 CCAGCGAAAATAAGACGCTGCTGATCAGGCGGAATTCCTTCTTTATCCTGAATCTTGGCC 898726 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | || || || || || |||| || || || || || || | Sbjct 898727 TTTACATTTTCGATTGTGTCAGAAGCCTCCACTTCTAAGGTGATTGTTTTGCCCGTTAAC 898786 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| Sbjct 898787 GTCTTCACAAAAATTTGCAT 898806 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || |||||||| || || || |||| || | |||||| Sbjct 896843 AAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGACCGTC 896902 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || ||||||||||| || || ||||| ||||| || || || ||||| || || Sbjct 896903 CTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGGAATGCCTTCCTTGTC 896962 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || ||||| || ||||| || | ||||| Sbjct 896963 TTGGAT-TTTGC-TTGACATTCTCGATAGTATC 896993 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||||| || || || || ||||| ||||| || || |||||| Sbjct 899425 CCAGCAAAAATCAGGCGTTGTTGGTCTGGCGGGATACCTTCCTTATCTTGTATTTTTGCT 899484 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || || || || || ||||| ||||| ||||| | | Sbjct 899485 TTGACATTTTCAATCGTGTCTGAAGCCTCCACTTCAAGAGTAATCGTCTTCCCAGTTAAT 899544 Query 104540 GTTTTTACAAATATCTGCAT-TTTGT 104564 || || || || || ||||| ||||| Sbjct 899545 GTCTTCACGAAAATTTGCATGTTTGT 899570 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || || || || ||||| || |||||||||||||| || |||||||| Sbjct 898086 ATTCCTCCGCGTAATCTGAGCACCAGATGCAAAGTAGATTCTTTCTGGATGTTATAGTCC 898145 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || | ||| ||||| ||||||||||| ||||| Sbjct 898146 GAAAGTGTGCGACCATCTTCCAGTTGTTTTCCTACAAAA 898184 >seq67 Length=267328 Score = 122 bits (134), Expect = 2e-22 Identities = 113/141 (80%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | | ||| ||||| |||||||| || ||||| ||||||||||| ||| Sbjct 75051 CCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCCTCTTTGTCCTGAATCTTAGCT 75110 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 |||||||| || | ||||| | ||| ||| ||||| |||||||| ||||||||||| | Sbjct 75111 TTTACATTCTCAATTGTATC-CGAGGATTCGACCTCAAGTGTAATCGTCTTACCAGTTAA 75169 Query 104539 TGTTTTTACAAATATCTGCAT 104559 ||| || || || || ||||| Sbjct 75170 TGTCTTGACGAAAATTTGCAT 75190 >seq13 Length=582103 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| || | |||||| ||||| || || ||||||||||||||||| || Sbjct 196596 TTACCTGCAAAAATAAGTCGCTGTTGGTCAGGCGGAATGCCTTCTTTATCCTGAATTTTA 196537 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || || | ||||||||| || || || || || || || Sbjct 196536 GCTTTCACATTCTCAATAGTGTCAGACGATTCTACCTCAAGGGTGATCGTTTTTCCTGTT 196477 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | ||| || || ||||||||||| ||| Sbjct 196476 AATGTCTTCACGAATATCTGCATCTTG 196450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151313367788912