Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq915 136 3e-27 seq2 114 9e-21 seq250 84.2 1e-11 >seq915 Length=7811 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1642 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1701 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| ||||||||||||| Sbjct 1702 TAATCCATTCATGCGCGTCACGAATTAGATGACGA 1736 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 4060 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 4119 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 4120 GGTCGTATTTAGCCTTA 4136 >seq2 Length=1259180 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | |||| ||| || || |||||| ||||| |||||||| || Sbjct 897860 ACCACCACGAAGACGAAGAACCAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCCGA 897919 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| |||| || | || ||||| ||||| || || | || ||||| | || Sbjct 897920 TAAGGTACGACCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCCGGTGG 897979 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||| ||||| |||||| || ||||||| || |||||| | || || Sbjct 897980 AATGCCTTCCTTGTCTTGGATTTTTGCTTTGACATTCTCGATAGTATCCGAAGCCTCTAC 898039 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || || ||||||||||| ||||| ||||| || ||||| Sbjct 898040 TTCCAAAGTTATGGTCTTACCCGTCAAAGTTTTTACGAAAATTTGCAT 898087 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 |||||||| ||||| || |||||||| | |||| || ||||| ||| ||||| | Sbjct 899054 CCGGCAAAGATTAGTCGCTGTTGATCTGGTGGGATCCCCTCTTTATCCTGGATTTTCGCC 899113 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 || ||||||| || || || ||| || || | ||||||||||||||| || | Sbjct 899114 TTAACATTCTCGATCGTGTCAGATGCTTCCACCTCCAGTGTAATAGTTTTACCAGTAAGA 899173 Query 38298 GTTTTCACGAATATCTGCATG 38318 ||||| ||||| ||||||||| Sbjct 899174 GTTTTAACGAAAATCTGCATG 899194 >seq250 Length=97717 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 ||||||||| |||||| ||||||| ||||||| |||||||| ||||||||||||| | Sbjct 87198 CTCTTCAAAATTCTTTGCAACTTTTCCTCACGATACTTGTTTGCTATCGGTCTCGTTGAC 87257 Query 20011 ATATTTAGC 20019 ||||||||| Sbjct 87258 ATATTTAGC 87266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923670377884