Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 8e-12 seq64 84.2 3e-11 >seq7 Length=791039 Score = 86.0 bits (94), Expect = 8e-12 Identities = 84/108 (78%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 33152 TATATCCACT----TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 33207 |||||| ||| || || || ||||||||||||||| ||||| ||||| | || || Sbjct 94852 TATATCAACTGACCTCATCAACAGTCCAAAATGATGCCAAGGCCTTCTTATAAAAATCCC 94793 Query 33208 AGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 | || |||||| ||| || ||||| |||||||| | ||||||||||| Sbjct 94792 AAATATCATGAAATTTGATGGGAAATATAACAAAACGATTTGGATTTT 94745 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| |||||||| | ||||||||||| |||||||||||||| |||| | |||||| Sbjct 96864 TTTCTGGTATTCGCTGACACGTTTTTCAAAAAAATTAGTTTTGGCTTCGATCGATATACG 96805 Query 32429 TTCCATGAAATCGAATGGATT 32449 ||||||||||| |||||||| Sbjct 96804 CTCCATGAAATCAAATGGATT 96784 >seq64 Length=281649 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 ||||| || || || || | || ||||||||||| || || || | ||||||||||||| Sbjct 111796 AGAATGAAGGCATCAGCCAGGCCCTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 111737 Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 || ||| ||||| || | ||||||||||| ||| || | || || | ||| || Sbjct 111736 GACCGTTCTGCTTCCGGTACTGGATAATAATTGCGATCGATGACCTTGTTCAAATTCCTA 111677 Query 62678 ACAATTACTTT 62688 |||| |||||| Sbjct 111676 ACAACTACTTT 111666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633586346814400