Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loa_20loa_20[refseq_20GCF_5F000183805.2_202012-07-06] 5,764 sequences; 91,365,832 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 seq67 82.4 6e-11 >seq2 Length=1259180 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || ||||| || | ||| | ||||| || | | Sbjct 898087 ATGCAAATTTTCGTAAAAACTTTGACGGGTAAGACCATAACTTTGGAAGTAGAGGCTTCG 898028 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| |||||| ||||||||||| || |||||||| ||||| Sbjct 898027 GATACTATCGAGAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATTCCACCGGATCAG 897968 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | ||||| || ||| | || ||||||||| Sbjct 897967 CAGAGACTGATCTTTGCTGGAAAGCAGCTGGAGGACGGTCGTACCTTATCGGATTACAAC 897908 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 ||||| || || || || | ||| | ||| | || | || || |||| Sbjct 897907 ATTCAGAAGGAGTCGACGCTGCATCTGGTTCTTCGTCTTCGTGGTGGTT 897859 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||||||||| || || || ||||| || || ||| | |||||||||||||| | Sbjct 899568 AAACATGCAAATTTTCGTGAAGACATTAACTGGGAAGACGATTACTCTTGAAGTGGAGGC 899509 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || ||||| |||||| ||||| ||||| ||||| || || || Sbjct 899508 TTCAGACACGATTGAAAATGTCAAAGCAAAAATACAAGATAAGGAAGGTATCCCGCCAGA 899449 Query 22335 TCAACAACGTCTTATATTTGCCGG 22358 |||||||| || || ||||| || Sbjct 899448 CCAACAACGCCTGATTTTTGCTGG 899425 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| ||||||||||| || |||||||| ||||| || | || || ||||| || || Sbjct 896971 AAAATCCAAGACAAGGAAGGCATTCCACCGGATCAGCAGAGACTGATCTTTGCTGGAAAG 896912 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| || ||| | || |||||||||||||| || || || || | ||| Sbjct 896911 CAGCTGGAGGACGGTCGTACCTTATCGGATTACAACATTCAGAAGGAGTCGACGCTGCAT 896852 Query 22423 TTAGTTTTGCGATTGCGCGGAGGTT 22447 | ||| | || | || || |||| Sbjct 896851 CTGGTTCTTCGTCTTCGTGGTGGTT 896827 >seq67 Length=267328 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || ||||| ||||| ||| | || ||||| || ||| || | Sbjct 75190 ATGCAAATTTTCGTCAAGACATTAACTGGTAAGACGATTACACTTGAGGTCGAATCCTCG 75131 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||| ||||| ||||| || || || ||||| Sbjct 75130 GATACAATTGAGAATGTAAAAGCTAAGATTCAGGACAAAGAGGGCATACCTCCAGATCAG 75071 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || | || ||||| || Sbjct 75070 CAGCGATTGATTTTTGCAGG 75051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698514632660